Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch1g1654 | TTGACAATGAGAATTATTTGCATTCTACTGTTGATGTCTCTCTTCAATGGGAGTTCCTCAATTGGAGATAGCACAAACGTATCCACAAGACCCGATGTTGTCAACATTGGGGCTTTATTCTCTTTCAGTTCTATGATAGGCAGAGTTGCCAAAATTGCTGTAGAAGCTGCCATCGAGGATGTAAATTCTGATCCAGCCGTTCTTGGGGGGACGAAGCTGAAGCTCACATTTCATGATACCAATTACAGTGGATTTTTGGGCATCATTGAGTCCTTGCGTTTCATGGAGACTGAGACTATGGCCATAATTGGCCCCCAAAACTCTGTAACTGCTCATGTAATATCTCATATTGCAAATGAGCTCCAAGTCCCTCTATTGTCATTTTCAGCAACAGATCCCACACTGTCATCCCTTCAGTTTCCTTTTTTTATCAGAAGTTCACAGAATGATCTGTATCAGATGGCTGCAATAGCTGAAATAGTCGACTACTATCATTGGAATGAGGTGATTGCCATCTTTGTTGATGATGACCATGGTAGAAATGGTATTGCTGCCTTAGGTGATGAGCTTAATGAGAAACGCTGTAAGATCTCGTTGAAAGTACCATTGAAGTCTAATGCAAGTCGAGACGAGGTCACTGATGCACTTGTTAAGGTGGCTTTAACTGAATCTCGGATACTTGTCGTTCACACTTATGAGACCACAGGTATGGTAGTGCTCAGCGTCGCTCAATATCTTGGATTGACAGGACCTGGGTATGTGTGGATAGCCACAAACTGGATTTCTTTACTACTCGACACAAATTCTCCTCTTTCGTCTGCTTCTATGGAAAATATTCAAGGAGTAATTGCTTTGCGTCTTTATACGCCAGATTCTGCACTCAAAAGGAATTTCGTTTCTAGGTGGACCAACTTGACTATTGGAAAGACATCGAGTGGCCCACTCGGATTGAGTACGTACGGATTATATGCTTATGATACTGTTTGGATGCTTGCTCATGCTATAAATGCATTTCTTAATGAAGGGGGTAATCTTTCATTTTCAAATCTTTCCAAGTTAAATGGGATTGGTGCTGGAGCTTTGGATTTTAACTCTATGAGCATCTTCAATGGTGGGAAGACATTGCTGCAGAAAATTTTAGATGTTAAATTTACTGGAATAACAGGCCCAGTTGAGTTCACTCTAGATAGGAACTTAATTCGCCCAGCGTTTGAAGTAATCAATATAATCGGCACAGGGGAAAGGAGAATTGGTTATTGGTCCAACTATTCTGGTTTGTCTATTGTGCCTCCTGAAACTCTTTACTCGAAACCGCCTAATCGTTCCAGTTTAAATCAAAAGCTGTATGATGTCGTATGGCCGGGACAAGCAACACAGAAGCCTCGTGGATGGGCATTTCCAAGCAGTGGAAGACACCTGAGAATCGGAGTCCCAAGACGAGTCAGTTATCTGGAATTTGTCTCACAAGTGGAAGGAACTGATATGTTCAGTGGCTACTGTGTTGATGTCTTCACTGCAGCAATCAACTTGTTGCCTTATGCGGTCCCATATAAGTTAATTCCTTTTGGAGATGGCAGTGTTAATCCAAGTGGAACCGAGCTTATTCGTCTAATGACAACCGGGGTCTTTGATGCAGCAATAGGTGACATTGCAATAATCACAAACCGAACCAGGATGGCAGATTTTACACAGCCATACATCGAGTCTGGCCTAGTAGTTGTAGCCCCGGTCAGGAAGTCGAATTCTAGTGCTTGGGCCTTTCTACGGCCATTCACTCCGACAATGTGGTGTGTTACTGCTATTTCATTTCTTATAGTAGGAGCAGTTGTTTGGATTTTGGAGCATAGGATGAATGACGATTTTCGAGGCCCTCCGAAGAGACAAGTTATCACTATGCTATGGTTCAGCTTTTCAACTCTATTCTTTTCTCATCGGGAAAACACAGTCAGTACCCTTGGTCGCCTCGTGCTGATCATATGGTTATTTGTTGTTCTTATTATCAACTCGAGCTACACCGCAAGCTTGACCTCTATCCTTACAGTGCAACAACTTTCTTCTCCTGTTAAAGGGATCGAAACTTTGGTTGCAAACAATGATCCAATTGGCTACCAGCAAGGTTCATTCGCTCGAAACTACTTGATTGAGGAACTCGGCATTGATGAGTCCAGACTTATTCCACTCATCTCAGTAGAACACTATGTAAAAGCCTTGAATGATGGCCCCAAGAAGAATGGGGTTGCTGCTATCATCGACGAGCGAGCATATGTAGAGCTCTTCCTTTCAACCCATTGCGAATACAGTATCGTTGGTCAAGAGTTCACCAAAAATGGGTGGGGATTTGCTTTCCCACGCGACTCCCCTTTAGCAGTCGACATGTCCACAGCTATTCTAAGACTGTCCGAAAATGGGGATCTTCAAAGGATCCATGATAAATGGTTAATGAAAAGTGCCTGCACATCACAAGCCTCCAAATTTGAGGTCGATCGGCTTCAACTCAATAGCTTTTGGGGACTGTTTCTAATATGTGGAGTAGCCTGCCTTCTTGCTCTGTTGATTTACCTCTTCCTAATGGTGCGCCAATATAGCAAGCATTACTCGGAAGAACTCGGGTCCACTGGCCAAGCCACTCGCTCTGCAAGCCTGCAAAGATTTCTTTCTTTTGTCGATGAAAAGGAAGACGTCATCAGAAGTCGATCTAAGAGAAAACAGATGCAGGACGCCTCAATTAGGAGCATGGATGGAGAAAATTCAACTAGCAAGTCCAGAAAACTTGGCCATGGTGATGCTGATATTGATGCATGA | 2802 | 43.15 | LTMRIICILLLMSLFNGSSSIGDSTNVSTRPDVVNIGALFSFSSMIGRVAKIAVEAAIEDVNSDPAVLGGTKLKLTFHDTNYSGFLGIIESLRFMETETMAIIGPQNSVTAHVISHIANELQVPLLSFSATDPTLSSLQFPFFIRSSQNDLYQMAAIAEIVDYYHWNEVIAIFVDDDHGRNGIAALGDELNEKRCKISLKVPLKSNASRDEVTDALVKVALTESRILVVHTYETTGMVVLSVAQYLGLTGPGYVWIATNWISLLLDTNSPLSSASMENIQGVIALRLYTPDSALKRNFVSRWTNLTIGKTSSGPLGLSTYGLYAYDTVWMLAHAINAFLNEGGNLSFSNLSKLNGIGAGALDFNSMSIFNGGKTLLQKILDVKFTGITGPVEFTLDRNLIRPAFEVINIIGTGERRIGYWSNYSGLSIVPPETLYSKPPNRSSLNQKLYDVVWPGQATQKPRGWAFPSSGRHLRIGVPRRVSYLEFVSQVEGTDMFSGYCVDVFTAAINLLPYAVPYKLIPFGDGSVNPSGTELIRLMTTGVFDAAIGDIAIITNRTRMADFTQPYIESGLVVVAPVRKSNSSAWAFLRPFTPTMWCVTAISFLIVGAVVWILEHRMNDDFRGPPKRQVITMLWFSFSTLFFSHRENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSPVKGIETLVANNDPIGYQQGSFARNYLIEELGIDESRLIPLISVEHYVKALNDGPKKNGVAAIIDERAYVELFLSTHCEYSIVGQEFTKNGWGFAFPRDSPLAVDMSTAILRLSENGDLQRIHDKWLMKSACTSQASKFEVDRLQLNSFWGLFLICGVACLLALLIYLFLMVRQYSKHYSEELGSTGQATRSASLQRFLSFVDEKEDVIRSRSKRKQMQDASIRSMDGENSTSKSRKLGHGDADIDA | 933 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 17431956 | 17436825 | + | MC01g1239 | Mch1g1654 | 676546 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch1g1654 | 933 | FunFam | Glutamate receptor | 149 | 307 | - | - | |
Mch1g1654 | 933 | Pfam | Receptor family ligand binding region | 51 | 411 | IPR001828 | - | |
Mch1g1654 | 933 | Gene3D | - | 584 | 710 | - | - | |
Mch1g1654 | 933 | FunFam | Glutamate receptor | 468 | 584 | - | - | |
Mch1g1654 | 933 | CDD | GluR_Plant | 473 | 813 | - | - | |
Mch1g1654 | 933 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 47 | 63 | - | - | |
Mch1g1654 | 933 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 324 | 336 | - | - | |
Mch1g1654 | 933 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 107 | 135 | - | - | |
Mch1g1654 | 933 | Pfam | Ligand-gated ion channel | 815 | 846 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
Mch1g1654 | 933 | Pfam | Bacterial extracellular solute-binding proteins, family 3 | 531 | 593 | IPR001638 | - | |
Mch1g1654 | 933 | SMART | GluR_14 | 472 | 815 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
Mch1g1654 | 933 | Gene3D | - | 465 | 583 | - | - | |
Mch1g1654 | 933 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 34 | 899 | IPR015683 | GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER) | |
Mch1g1654 | 933 | Gene3D | - | 779 | 812 | - | - | |
Mch1g1654 | 933 | MobiDBLite | consensus disorder prediction | 893 | 933 | - | - | |
Mch1g1654 | 933 | MobiDBLite | consensus disorder prediction | 916 | 933 | - | - | |
Mch1g1654 | 933 | PIRSF | IGluLR_plant | 1 | 930 | IPR017103 | - | |
Mch1g1654 | 933 | MobiDBLite | consensus disorder prediction | 893 | 908 | - | - | |
Mch1g1654 | 933 | FunFam | Glutamate receptor | 584 | 714 | - | - | |
Mch1g1654 | 933 | SUPERFAMILY | Periplasmic binding protein-like I | 30 | 464 | IPR028082 | - | |
Mch1g1654 | 933 | Gene3D | - | 149 | 426 | - | - | |
Mch1g1654 | 933 | FunFam | Glutamate receptor | 710 | 817 | - | - | |
Mch1g1654 | 933 | SUPERFAMILY | Periplasmic binding protein-like II | 451 | 816 | - | - | |
Mch1g1654 | 933 | CDD | PBP1_GABAb_receptor_plant | 35 | 430 | IPR044440 | - | |
Mch1g1654 | 933 | Gene3D | - | 52 | 401 | - | - | |
Mch1g1654 | 933 | Gene3D | - | 742 | 778 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch1g1654 | Mch-Chr1:17431956 | Mch2g0636 | Mch-Chr2:4344135 | 0 | dispersed | |
Mch1g1654 | Mch-Chr1:17431956 | Mch11g0043 | Mch-Chr11:274252 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch1g1654 | K05387 | - | csv:101213408 | 1598.56 |