Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1654 TTGACAATGAGAATTATTTGCATTCTACTGTTGATGTCTCTCTTCAATGGGAGTTCCTCAATTGGAGATAGCACAAACGTATCCACAAGACCCGATGTTGTCAACATTGGGGCTTTATTCTCTTTCAGTTCTATGATAGGCAGAGTTGCCAAAATTGCTGTAGAAGCTGCCATCGAGGATGTAAATTCTGATCCAGCCGTTCTTGGGGGGACGAAGCTGAAGCTCACATTTCATGATACCAATTACAGTGGATTTTTGGGCATCATTGAGTCCTTGCGTTTCATGGAGACTGAGACTATGGCCATAATTGGCCCCCAAAACTCTGTAACTGCTCATGTAATATCTCATATTGCAAATGAGCTCCAAGTCCCTCTATTGTCATTTTCAGCAACAGATCCCACACTGTCATCCCTTCAGTTTCCTTTTTTTATCAGAAGTTCACAGAATGATCTGTATCAGATGGCTGCAATAGCTGAAATAGTCGACTACTATCATTGGAATGAGGTGATTGCCATCTTTGTTGATGATGACCATGGTAGAAATGGTATTGCTGCCTTAGGTGATGAGCTTAATGAGAAACGCTGTAAGATCTCGTTGAAAGTACCATTGAAGTCTAATGCAAGTCGAGACGAGGTCACTGATGCACTTGTTAAGGTGGCTTTAACTGAATCTCGGATACTTGTCGTTCACACTTATGAGACCACAGGTATGGTAGTGCTCAGCGTCGCTCAATATCTTGGATTGACAGGACCTGGGTATGTGTGGATAGCCACAAACTGGATTTCTTTACTACTCGACACAAATTCTCCTCTTTCGTCTGCTTCTATGGAAAATATTCAAGGAGTAATTGCTTTGCGTCTTTATACGCCAGATTCTGCACTCAAAAGGAATTTCGTTTCTAGGTGGACCAACTTGACTATTGGAAAGACATCGAGTGGCCCACTCGGATTGAGTACGTACGGATTATATGCTTATGATACTGTTTGGATGCTTGCTCATGCTATAAATGCATTTCTTAATGAAGGGGGTAATCTTTCATTTTCAAATCTTTCCAAGTTAAATGGGATTGGTGCTGGAGCTTTGGATTTTAACTCTATGAGCATCTTCAATGGTGGGAAGACATTGCTGCAGAAAATTTTAGATGTTAAATTTACTGGAATAACAGGCCCAGTTGAGTTCACTCTAGATAGGAACTTAATTCGCCCAGCGTTTGAAGTAATCAATATAATCGGCACAGGGGAAAGGAGAATTGGTTATTGGTCCAACTATTCTGGTTTGTCTATTGTGCCTCCTGAAACTCTTTACTCGAAACCGCCTAATCGTTCCAGTTTAAATCAAAAGCTGTATGATGTCGTATGGCCGGGACAAGCAACACAGAAGCCTCGTGGATGGGCATTTCCAAGCAGTGGAAGACACCTGAGAATCGGAGTCCCAAGACGAGTCAGTTATCTGGAATTTGTCTCACAAGTGGAAGGAACTGATATGTTCAGTGGCTACTGTGTTGATGTCTTCACTGCAGCAATCAACTTGTTGCCTTATGCGGTCCCATATAAGTTAATTCCTTTTGGAGATGGCAGTGTTAATCCAAGTGGAACCGAGCTTATTCGTCTAATGACAACCGGGGTCTTTGATGCAGCAATAGGTGACATTGCAATAATCACAAACCGAACCAGGATGGCAGATTTTACACAGCCATACATCGAGTCTGGCCTAGTAGTTGTAGCCCCGGTCAGGAAGTCGAATTCTAGTGCTTGGGCCTTTCTACGGCCATTCACTCCGACAATGTGGTGTGTTACTGCTATTTCATTTCTTATAGTAGGAGCAGTTGTTTGGATTTTGGAGCATAGGATGAATGACGATTTTCGAGGCCCTCCGAAGAGACAAGTTATCACTATGCTATGGTTCAGCTTTTCAACTCTATTCTTTTCTCATCGGGAAAACACAGTCAGTACCCTTGGTCGCCTCGTGCTGATCATATGGTTATTTGTTGTTCTTATTATCAACTCGAGCTACACCGCAAGCTTGACCTCTATCCTTACAGTGCAACAACTTTCTTCTCCTGTTAAAGGGATCGAAACTTTGGTTGCAAACAATGATCCAATTGGCTACCAGCAAGGTTCATTCGCTCGAAACTACTTGATTGAGGAACTCGGCATTGATGAGTCCAGACTTATTCCACTCATCTCAGTAGAACACTATGTAAAAGCCTTGAATGATGGCCCCAAGAAGAATGGGGTTGCTGCTATCATCGACGAGCGAGCATATGTAGAGCTCTTCCTTTCAACCCATTGCGAATACAGTATCGTTGGTCAAGAGTTCACCAAAAATGGGTGGGGATTTGCTTTCCCACGCGACTCCCCTTTAGCAGTCGACATGTCCACAGCTATTCTAAGACTGTCCGAAAATGGGGATCTTCAAAGGATCCATGATAAATGGTTAATGAAAAGTGCCTGCACATCACAAGCCTCCAAATTTGAGGTCGATCGGCTTCAACTCAATAGCTTTTGGGGACTGTTTCTAATATGTGGAGTAGCCTGCCTTCTTGCTCTGTTGATTTACCTCTTCCTAATGGTGCGCCAATATAGCAAGCATTACTCGGAAGAACTCGGGTCCACTGGCCAAGCCACTCGCTCTGCAAGCCTGCAAAGATTTCTTTCTTTTGTCGATGAAAAGGAAGACGTCATCAGAAGTCGATCTAAGAGAAAACAGATGCAGGACGCCTCAATTAGGAGCATGGATGGAGAAAATTCAACTAGCAAGTCCAGAAAACTTGGCCATGGTGATGCTGATATTGATGCATGA 2802 43.15 LTMRIICILLLMSLFNGSSSIGDSTNVSTRPDVVNIGALFSFSSMIGRVAKIAVEAAIEDVNSDPAVLGGTKLKLTFHDTNYSGFLGIIESLRFMETETMAIIGPQNSVTAHVISHIANELQVPLLSFSATDPTLSSLQFPFFIRSSQNDLYQMAAIAEIVDYYHWNEVIAIFVDDDHGRNGIAALGDELNEKRCKISLKVPLKSNASRDEVTDALVKVALTESRILVVHTYETTGMVVLSVAQYLGLTGPGYVWIATNWISLLLDTNSPLSSASMENIQGVIALRLYTPDSALKRNFVSRWTNLTIGKTSSGPLGLSTYGLYAYDTVWMLAHAINAFLNEGGNLSFSNLSKLNGIGAGALDFNSMSIFNGGKTLLQKILDVKFTGITGPVEFTLDRNLIRPAFEVINIIGTGERRIGYWSNYSGLSIVPPETLYSKPPNRSSLNQKLYDVVWPGQATQKPRGWAFPSSGRHLRIGVPRRVSYLEFVSQVEGTDMFSGYCVDVFTAAINLLPYAVPYKLIPFGDGSVNPSGTELIRLMTTGVFDAAIGDIAIITNRTRMADFTQPYIESGLVVVAPVRKSNSSAWAFLRPFTPTMWCVTAISFLIVGAVVWILEHRMNDDFRGPPKRQVITMLWFSFSTLFFSHRENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSPVKGIETLVANNDPIGYQQGSFARNYLIEELGIDESRLIPLISVEHYVKALNDGPKKNGVAAIIDERAYVELFLSTHCEYSIVGQEFTKNGWGFAFPRDSPLAVDMSTAILRLSENGDLQRIHDKWLMKSACTSQASKFEVDRLQLNSFWGLFLICGVACLLALLIYLFLMVRQYSKHYSEELGSTGQATRSASLQRFLSFVDEKEDVIRSRSKRKQMQDASIRSMDGENSTSKSRKLGHGDADIDA 933
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17431956 17436825 + MC01g1239 Mch1g1654 676546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1654 933 FunFam Glutamate receptor 149 307 - -
Mch1g1654 933 Pfam Receptor family ligand binding region 51 411 IPR001828 -
Mch1g1654 933 Gene3D - 584 710 - -
Mch1g1654 933 FunFam Glutamate receptor 468 584 - -
Mch1g1654 933 CDD GluR_Plant 473 813 - -
Mch1g1654 933 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 47 63 - -
Mch1g1654 933 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 324 336 - -
Mch1g1654 933 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 107 135 - -
Mch1g1654 933 Pfam Ligand-gated ion channel 815 846 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Mch1g1654 933 Pfam Bacterial extracellular solute-binding proteins, family 3 531 593 IPR001638 -
Mch1g1654 933 SMART GluR_14 472 815 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Mch1g1654 933 Gene3D - 465 583 - -
Mch1g1654 933 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 34 899 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Mch1g1654 933 Gene3D - 779 812 - -
Mch1g1654 933 MobiDBLite consensus disorder prediction 893 933 - -
Mch1g1654 933 MobiDBLite consensus disorder prediction 916 933 - -
Mch1g1654 933 PIRSF IGluLR_plant 1 930 IPR017103 -
Mch1g1654 933 MobiDBLite consensus disorder prediction 893 908 - -
Mch1g1654 933 FunFam Glutamate receptor 584 714 - -
Mch1g1654 933 SUPERFAMILY Periplasmic binding protein-like I 30 464 IPR028082 -
Mch1g1654 933 Gene3D - 149 426 - -
Mch1g1654 933 FunFam Glutamate receptor 710 817 - -
Mch1g1654 933 SUPERFAMILY Periplasmic binding protein-like II 451 816 - -
Mch1g1654 933 CDD PBP1_GABAb_receptor_plant 35 430 IPR044440 -
Mch1g1654 933 Gene3D - 52 401 - -
Mch1g1654 933 Gene3D - 742 778 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1654 Mch-Chr1:17431956 Mch2g0636 Mch-Chr2:4344135 0 dispersed
Mch1g1654 Mch-Chr1:17431956 Mch11g0043 Mch-Chr11:274252 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1654 K05387 - csv:101213408 1598.56