Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1664 TTTCAGCAACAAAGTACTCATAATTCAAGCTTTCTTCAAAACAGCTCATTAGTTTGTGATCAGCACAAACCTGATGCAAGCTTGATGGAACCCTCAAATGGAAGTAATGGTCCCATTAGCAACCCGAATTTGGCCTCGAAGCAGAGACTGCGATGGACGCATGATCTTCACAACCGATTTGTTAATGCAGTGGCACAACTTGGTGGTCCAGATCGTGCTACACCCAAAGGTGTTCTTAGAGTAATGGGTGTTCAAGGTTTAACAATATACCACGTCAAAAGCCATCTGCAGAAATATCGACTTGCAAAATACCTTCCCGACTGCTCATCTGATGGAAAAAAGGCTGACAAGAAGGATTCTAGTGACATTCTATCAAATATCGACAGCTCGTCTGGAATGCAAATTACCGAAGCACTTAAGCTGCAGATGGAAGTCCAGAAGCGACTGCATGAACAATTAGAGGCAAGTCAGAGACAGCTTCAGTTACGGATTGAGGCCCAAGGCAAGTACCTAAAGAAGATAATTGAAGAGCAACAAAAACTCAGTGGGGTTCTTTCAGGAGCTCCAGTTCCTTCTTCCTTTTCAGCTCCTGCTTCTGGTGACAACTGCCCAGAAACTGATAAAAACGACCCGCCAACACCTGCCCCAACATCTGAGTCCCCTCGCCAAGAGAAAGCGTCGAAGGAACGTGCCCAAGCCAAGAGTATATCTGTTGATGATTCTTCCTCGTCTCATCACGAACCATTGACGCCAGATTCCGGTTGCCATAGCTCCCCAAGTGAGAGCCCAAGGCCAGTGAAGAAACCAAGGCAGTGCAGGGATGGTGCATTTTCCAAATCAGAAATGATACTTGCACATCAGATACTGGAGTCAAGTTTAAACTCCACTTACAAGGAATCACACTCAGTTTTTCCAGCCGGGGAAAAGTTCGATCCTTCGTCTGGAATATCGATAGGGGATCAACACCGATTAGAC 975 45.74 FQQQSTHNSSFLQNSSLVCDQHKPDASLMEPSNGSNGPISNPNLASKQRLRWTHDLHNRFVNAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDCSSDGKKADKKDSSDILSNIDSSSGMQITEALKLQMEVQKRLHEQLEASQRQLQLRIEAQGKYLKKIIEEQQKLSGVLSGAPVPSSFSAPASGDNCPETDKNDPPTPAPTSESPRQEKASKERAQAKSISVDDSSSSHHEPLTPDSGCHSSPSESPRPVKKPRQCRDGAFSKSEMILAHQILESSLNSTYKESHSVFPAGEKFDPSSGISIGDQHRLD 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17497365 17499439 - MC01g1249 Mch1g1664 676556

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1664 325 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 22 262 IPR046955 GO:0003700(InterPro)
Mch1g1664 325 MobiDBLite consensus disorder prediction 185 202 - -
Mch1g1664 325 MobiDBLite consensus disorder prediction 23 44 - -
Mch1g1664 325 Gene3D - 46 105 - -
Mch1g1664 325 Pfam MYB-CC type transfactor, LHEQLE motif 133 180 IPR025756 -
Mch1g1664 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 104 IPR017930 -
Mch1g1664 325 MobiDBLite consensus disorder prediction 185 278 - -
Mch1g1664 325 Pfam Myb-like DNA-binding domain 49 100 IPR001005 -
Mch1g1664 325 Coils Coil 143 163 - -
Mch1g1664 325 FunFam Myb family transcription factor 46 104 - -
Mch1g1664 325 MobiDBLite consensus disorder prediction 109 128 - -
Mch1g1664 325 MobiDBLite consensus disorder prediction 109 123 - -
Mch1g1664 325 NCBIfam myb-like DNA-binding domain, SHAQKYF class 47 102 IPR006447 GO:0003677(InterPro)
Mch1g1664 325 SUPERFAMILY Homeodomain-like 46 101 IPR009057 -
Mch1g1664 325 MobiDBLite consensus disorder prediction 236 260 - -
Mch1g1664 325 MobiDBLite consensus disorder prediction 297 325 - -
Mch1g1664 325 MobiDBLite consensus disorder prediction 28 44 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1664 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1664 Mch-Chr1:17497365 Mch5g1369 Mch-Chr5:14638168 1.46E-48 dispersed
Mch1g1664 Mch-Chr1:17497365 Mch1g1665 Mch-Chr1:17503106 2.03E-24 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch5g0198 . 12 320 G2-like Transcription Factor Family AT3G24120 57.6 1.7e-78 289.7
Mch4g0013 . 20 178 G2-like Transcription Factor Family AT3G24120 59.8 3.7e-41 165.6
Mch8g0732 . 15 150 G2-like Transcription Factor Family AT5G42630 62.8 8.9e-40 160.6
Mch11g0241 . 10 152 G2-like Transcription Factor Family AT5G42630 55.2 9.2e-37 150.6
Mch8g3114 . 12 488 G2-like Transcription Factor Family AT2G03500 50.3 2.1e-90 329.7
Mch4g1328 . 20 262 G2-like Transcription Factor Family AT1G25550 58.2 7.6e-57 217.6
Mch9g1987 . 19 253 G2-like Transcription Factor Family AT1G25550 53.8 6.2e-51 198.0
Mch4g1328 . 20 262 G2-like Transcription Factor Family AT3G25790 50.6 2.3e-39 159.5
Mch3g0205 . 1 289 G2-like Transcription Factor Family AT3G46640 50.2 3.5e-61 232.3
Mch1g0471 . 1 301 G2-like Transcription Factor Family AT5G05090 57.4 1.3e-74 276.6
Mch5g1325 . 1 275 G2-like Transcription Factor Family AT5G05090 54.6 9.5e-73 270.4
Mch5g0198 . 12 320 G2-like Transcription Factor Family AT4G13640 56.2 2.9e-62 235.7
Mch5g0198 . 12 320 G2-like Transcription Factor Family AT3G24120 57.6 1.7e-78 289.7
Mch4g0013 . 20 178 G2-like Transcription Factor Family AT3G24120 59.8 3.7e-41 165.6
Mch5g1160 . 35 267 G2-like Transcription Factor Family AT1G69580 50.8 2.2e-42 169.9
Mch4g0013 . 1 360 G2-like Transcription Factor Family AT1G79430 51.8 1.3e-72 270.4
Mch5g0198 . 31 209 G2-like Transcription Factor Family AT1G79430 56.8 1.1e-39 161.0
Mch1g1664 . 82 325 G2-like Transcription Factor Family AT2G01060 55.2 6.5e-57 217.6
Mch1g0471 . 1 301 G2-like Transcription Factor Family AT3G10760 63.2 4.7e-93 338.2
Mch5g1325 . 1 275 G2-like Transcription Factor Family AT3G10760 58.3 8.8e-84 307.4
Mch5g1325 . 1 193 G2-like Transcription Factor Family AT2G40970 61.6 3.2e-62 235.3
Mch1g0471 . 1 202 G2-like Transcription Factor Family AT2G40970 61.0 3.0e-60 228.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008809 1 2 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42782 PF00249 Myb_DNA-binding 2.50E-07 CL0123 Mch TF