Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1664 TTTCAGCAACAAAGTACTCATAATTCAAGCTTTCTTCAAAACAGCTCATTAGTTTGTGATCAGCACAAACCTGATGCAAGCTTGATGGAACCCTCAAATGGAAGTAATGGTCCCATTAGCAACCCGAATTTGGCCTCGAAGCAGAGACTGCGATGGACGCATGATCTTCACAACCGATTTGTTAATGCAGTGGCACAACTTGGTGGTCCAGATCGTGCTACACCCAAAGGTGTTCTTAGAGTAATGGGTGTTCAAGGTTTAACAATATACCACGTCAAAAGCCATCTGCAGAAATATCGACTTGCAAAATACCTTCCCGACTGCTCATCTGATGGAAAAAAGGCTGACAAGAAGGATTCTAGTGACATTCTATCAAATATCGACAGCTCGTCTGGAATGCAAATTACCGAAGCACTTAAGCTGCAGATGGAAGTCCAGAAGCGACTGCATGAACAATTAGAGGCAAGTCAGAGACAGCTTCAGTTACGGATTGAGGCCCAAGGCAAGTACCTAAAGAAGATAATTGAAGAGCAACAAAAACTCAGTGGGGTTCTTTCAGGAGCTCCAGTTCCTTCTTCCTTTTCAGCTCCTGCTTCTGGTGACAACTGCCCAGAAACTGATAAAAACGACCCGCCAACACCTGCCCCAACATCTGAGTCCCCTCGCCAAGAGAAAGCGTCGAAGGAACGTGCCCAAGCCAAGAGTATATCTGTTGATGATTCTTCCTCGTCTCATCACGAACCATTGACGCCAGATTCCGGTTGCCATAGCTCCCCAAGTGAGAGCCCAAGGCCAGTGAAGAAACCAAGGCAGTGCAGGGATGGTGCATTTTCCAAATCAGAAATGATACTTGCACATCAGATACTGGAGTCAAGTTTAAACTCCACTTACAAGGAATCACACTCAGTTTTTCCAGCCGGGGAAAAGTTCGATCCTTCGTCTGGAATATCGATAGGGGATCAACACCGATTAGAC 975 45.74 FQQQSTHNSSFLQNSSLVCDQHKPDASLMEPSNGSNGPISNPNLASKQRLRWTHDLHNRFVNAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDCSSDGKKADKKDSSDILSNIDSSSGMQITEALKLQMEVQKRLHEQLEASQRQLQLRIEAQGKYLKKIIEEQQKLSGVLSGAPVPSSFSAPASGDNCPETDKNDPPTPAPTSESPRQEKASKERAQAKSISVDDSSSSHHEPLTPDSGCHSSPSESPRPVKKPRQCRDGAFSKSEMILAHQILESSLNSTYKESHSVFPAGEKFDPSSGISIGDQHRLD 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17497365 17499439 - MC01g1249 Mch1g1664 676556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1664 325 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 22 262 IPR046955 GO:0003700(InterPro)
Mch1g1664 325 MobiDBLite consensus disorder prediction 185 202 - -
Mch1g1664 325 MobiDBLite consensus disorder prediction 23 44 - -
Mch1g1664 325 Gene3D - 46 105 - -
Mch1g1664 325 Pfam MYB-CC type transfactor, LHEQLE motif 133 180 IPR025756 -
Mch1g1664 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 104 IPR017930 -
Mch1g1664 325 MobiDBLite consensus disorder prediction 185 278 - -
Mch1g1664 325 Pfam Myb-like DNA-binding domain 49 100 IPR001005 -
Mch1g1664 325 Coils Coil 143 163 - -
Mch1g1664 325 FunFam Myb family transcription factor 46 104 - -
Mch1g1664 325 MobiDBLite consensus disorder prediction 109 128 - -
Mch1g1664 325 MobiDBLite consensus disorder prediction 109 123 - -
Mch1g1664 325 NCBIfam myb-like DNA-binding domain, SHAQKYF class 47 102 IPR006447 GO:0003677(InterPro)
Mch1g1664 325 SUPERFAMILY Homeodomain-like 46 101 IPR009057 -
Mch1g1664 325 MobiDBLite consensus disorder prediction 236 260 - -
Mch1g1664 325 MobiDBLite consensus disorder prediction 297 325 - -
Mch1g1664 325 MobiDBLite consensus disorder prediction 28 44 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1664 Mch-Chr1:17497365 Mch5g1369 Mch-Chr5:14638168 1.46E-48 dispersed
Mch1g1664 Mch-Chr1:17497365 Mch1g1665 Mch-Chr1:17503106 2.03E-24 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42782 PF00249 Myb_DNA-binding 2.50E-07 CL0123 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1664 - - - 0.0