Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1680 ATGGCCTCAATTGTTGGTTCCAAAGCTTCCTCAAATCAGCCACAAAAAACAACCCATGGAGAAATGGTTAATGGGAAGAATGCCGGGCCCTTGCCTCCGCAGATTTCTAGGTTAAGTAAACCTGAATCAGTTACTTCTGACCAGTCCAAATCAGTTCAGAGTATCTCAAAGCAGAATATGGAAATATCTTCCGACAAAAAGTCACCAGTATCGAATCAAAATGGATCTGTTAAGTCGTTGACTGAAAATTTTAATTTCAGCATTTCGTCACCTGGGCTGAAACAAACATCAACTGAAGTAGATTCCCCCCACAATGAAGCTAGATGCTCACCTGGAAGCTCACTAGACCAAGAGAAGAAAACATCAGAATATGGAAGCGTAAAGAGCAGCTCTTTTTCCGCCAAAGTGAGTGATGGGACTAGCAGTCTTGCCAAGACCAGTGGAAGCACAAAGGTTAGCGACCATGGTAACTTTGTCGAGAGTGGCAAGAGCAGTATATGTAGAGGGAGCACGAGCAGCGATGTAAGCGATGAAAGCTCTTGCAGTAGTTTTAGTAGTAGTATCAGTAAACCTCATAAAGCAAATGATTTGAGATGGGAGGCCATTCAAGTTGTTCGTGCAAAAGACAAGGCGATGGGATTGGGTCATTTTAGACTTCTGAAGAAGTTGGGTTGTGGGGATATTGGGAGTGTCTATCTCTCTGAGTTAAGTGGCACCAAATGTCATTTTGCAATGAAGGTTATGGATAAAAATACTCTAGCGAGTCGCAAAAAATTGCTTCGTGCGCAGACAGAAAGAGAAATACTTCAATCTCTTGATCATCCCTTCCTTCCAACGTTATACACCCACTTTGAGACGGAAAAATTCTCATGTTTGGTGATGGAGTTCTGCCCTGGAGGAGACTTGCACACTCTAAGGCAGAGGCAACCAGGGAAGCATTTTCCTGAGCAGGCAGTGAAATTCTATGTAGCAGAGGTTCTTCTTGCACTGGAATATTTGCACATGCTTGGGATTGTGTACCGTGATCTTAAGCCAGAAAATGTTCTCGTGAGGGAAGATGGACACATAATGCTTTCGGATTTTGACCTCTCTCTCCGTTGTGCTGTTAGTCCGACTCTTGTCAAAAGTCTCTCTACAGAGTCTGAGGCTTTAAGAAAGAACACGGGTTACTGTGTCCAGCCTGCTTGCATTGAGCCTTCCTGCATCCAACCATCTTGTGTAGTTCCTACAACCTGCTTCTCGCCTCGCCTCTTTTCTAGTAAGTCAAAGAAGGAGCGGAAACCCAAAACTGAAATGGGAAATCAGGTCAGCCCATTGCCTGAGCTCATTGCGGAGCCAACCGATGCCCGATCCATGTCGTTTGTTGGAACACACGAGTACTTGGCACCTGAGATCATCAAGGGTGAAGGTCATGGAAGTGCTGTAGATTGGTGGACTTTTGGAATCTTTCTATACGAGCTACTATTTGGTAAAACTCCTTTTAAGGGGTCTGGAAATCGAGCTACATTGTTCAACATTGTCGGTCAGCCACTTCGGTTTCCAGATGCACCAGTTGTGAGCTTTGCTGCAAAGGATCTCATAAGGGGATTGCTAGTGAAGGAACCACAACACAGATTGGCTTATAAACGTGGAGCAACTGAGATCAAGCAGCATCCTTTCTTTGAAGGAGTAAACTGGGCATTAATACGTTGTGCTACCCCTCCCGAAATCCCAAGGCCGGTCGAGATCGAGAGAATACCTCATGCTGTGGCATCCACCAGTGAAAAGGCCCCTCCTGTTACAGTTGCTGCAGATAAAAAAGCATCTGATAGTTATCTCGAGTTCGATTTCTTTTAG 1836 44.83 MASIVGSKASSNQPQKTTHGEMVNGKNAGPLPPQISRLSKPESVTSDQSKSVQSISKQNMEISSDKKSPVSNQNGSVKSLTENFNFSISSPGLKQTSTEVDSPHNEARCSPGSSLDQEKKTSEYGSVKSSSFSAKVSDGTSSLAKTSGSTKVSDHGNFVESGKSSICRGSTSSDVSDESSCSSFSSSISKPHKANDLRWEAIQVVRAKDKAMGLGHFRLLKKLGCGDIGSVYLSELSGTKCHFAMKVMDKNTLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQRQPGKHFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKSLSTESEALRKNTGYCVQPACIEPSCIQPSCVVPTTCFSPRLFSSKSKKERKPKTEMGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNIVGQPLRFPDAPVVSFAAKDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPRPVEIERIPHAVASTSEKAPPVTVAADKKASDSYLEFDFF 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17579827 17585014 + MC01g1263 Mch1g1680 676572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1680 611 FunFam Serine/threonine-protein kinase D6PK-like 215 300 - -
Mch1g1680 611 MobiDBLite consensus disorder prediction 38 190 - -
Mch1g1680 611 Gene3D Phosphorylase Kinase; domain 1 215 300 - -
Mch1g1680 611 SMART serkin_6 217 554 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g1680 611 Gene3D Transferase(Phosphotransferase) domain 1 448 572 - -
Mch1g1680 611 CDD STKc_phototropin_like 216 577 - -
Mch1g1680 611 FunFam serine/threonine-protein kinase D6PK-like 301 368 - -
Mch1g1680 611 ProSiteProfiles Protein kinase domain profile. 217 554 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g1680 611 FunFam Serine/threonine-protein kinase AGC1-7 447 572 - -
Mch1g1680 611 SUPERFAMILY Protein kinase-like (PK-like) 192 585 IPR011009 -
Mch1g1680 611 ProSitePatterns Serine/Threonine protein kinases active-site signature. 338 350 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g1680 611 Pfam Protein kinase domain 451 554 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g1680 611 Pfam Protein kinase domain 218 370 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g1680 611 Gene3D Transferase(Phosphotransferase) domain 1 301 369 - -
Mch1g1680 611 PANTHER FLIPPASE KINASE 1-RELATED 68 586 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Mch1g1680 611 MobiDBLite consensus disorder prediction 1 22 - -
Mch1g1680 611 MobiDBLite consensus disorder prediction 1 190 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1680 Mch-Chr1:17579827 Mch8g1468 Mch-Chr8:10997803 2.13E-224 dispersed
Mch1g1680 Mch-Chr1:17579827 Mch2g0443 Mch-Chr2:3222422 4.80E-106 wgd
Mch1g1680 Mch-Chr1:17579827 Mch3g0725 Mch-Chr3:11538666 4.41E-286 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77143 PF00069 Pkinase 8.60E-38 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1680 K08286 - csv:101209748 1091.64