Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1718 ATGGCGACCTCATGTTTTGGTTCACTTTGCATTCGGAAATCAAAGAGCAAGCCCTTATCAACCCCTTCTTCATTGAAATCCCAGATGAATTCTGAAATGGAAAATATGGAGAGGAGGAGATTTGATAGTTTGGAATCGTGGTCCATGATCCTAGAGTCTGAAAATGTGGAAACTTGGGAGACATCAAAGGAGGATCAGGAGGAGTGGACAGCTGATCTATCTCAACTCTTCATCGGTAACAAATTTGCATCCGGTGCTCACAGTAGAATTTACCGTGGAATTTACAAGCAGAGAGCCGTGGCTGTGAAGATGGTGAGAATTCCAAACCAAAAGGAGGAGACAAGAGCCAAACTTGAGCAACAGTTCAAGTCTGAAGTTGCTCTGCTTTCTCGTCTCTTTCATCCCAACATAGTTCAGTTCATTGCAGCCTGTAAAAAGCCGCCTGTATATTGCATAATCACAGAGTATATGTCACAAGGAACCCTGAGGATGTATCTCAACAAAAAAGAGCCATATTCACTCTCAACAGAAACAATATTGAGGTTAGCCCTTGACATATCAAGAGGAATGGAATATCTTCATTCTCAAGGAGTAATCCACAGAGACCTCAAATCAAATAACTTGCTTCTAAACGATGAAATGAGAGTAAAAGTGGCGGATTTCGGAACCTCCTGCCTCGAAACACAGTGCCGAGAATCAAAAGGGAACATGGGAACTTACCGATGGATGGCGCCGGAGATGATCAAGGAGAAACCCTACACTCGGAAAGTTGATGTCTACAGCTTCGGAATTGTGCTGTGGGAGCTCACCACGGCTCTGCTTCCCTTTCAGGGGATGACCCCCGTGCAGGCTGCCTTTGCCGTCGCCGAGAAGAATGAGAGGCCGCCATTGCCGGCGAGTTGTCAGCCGGCGTTAGCCCACCTGATTAAGCGGTGTTGGGCGGCAAATCCGTCGAAGCGGCCGGATTTCAGCGACATTGTGGTGGCCTTGGAGAAGTACGACGAATGTGTGAAAGAAGGCCTTCCTCTTTCACACCACAGAAAATTGGTAAGCCGAAACGCCATTATTGAACGCTTGAAAGCCTGCGCCTCCACCAGCTCCTCCATACCTGTACATGCCTGA 1122 47.24 MATSCFGSLCIRKSKSKPLSTPSSLKSQMNSEMENMERRRFDSLESWSMILESENVETWETSKEDQEEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPNQKEETRAKLEQQFKSEVALLSRLFHPNIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSTETILRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETQCRESKGNMGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEKNERPPLPASCQPALAHLIKRCWAANPSKRPDFSDIVVALEKYDECVKEGLPLSHHRKLVSRNAIIERLKACASTSSSIPVHA 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17777500 17780671 - MC01g1293 Mch1g1718 676610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1718 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g1718 373 CDD STKc_MAP3K-like 83 327 - -
Mch1g1718 373 PRINTS Tyrosine kinase catalytic domain signature 238 248 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g1718 373 PRINTS Tyrosine kinase catalytic domain signature 154 167 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g1718 373 PRINTS Tyrosine kinase catalytic domain signature 301 323 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g1718 373 PRINTS Tyrosine kinase catalytic domain signature 192 210 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g1718 373 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g1718 373 Gene3D Transferase(Phosphotransferase) domain 1 159 357 - -
Mch1g1718 373 SMART serkin_6 76 337 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g1718 373 Pfam Protein tyrosine and serine/threonine kinase 79 329 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g1718 373 FunFam Serine/threonine-protein kinase isoform 1 66 158 - -
Mch1g1718 373 ProSiteProfiles Protein kinase domain profile. 76 333 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g1718 373 Gene3D Phosphorylase Kinase; domain 1 65 158 - -
Mch1g1718 373 SUPERFAMILY Protein kinase-like (PK-like) 51 327 IPR011009 -
Mch1g1718 373 PANTHER SERINE-THREONINE PROTEIN KINASE 55 331 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Mch1g1718 373 FunFam serine/threonine-protein kinase HT1 159 352 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1718 Mch-Chr1:17777500 Mch3g1125 Mch-Chr3:14599627 3.12E-109 dispersed
Mch3g1453 Mch-Chr3:16850732 Mch1g1718 Mch-Chr1:17777500 1.22E-139 transposed
Mch8g2582 Mch-Chr8:28960626 Mch1g1718 Mch-Chr1:17777500 1.09E-94 transposed
Mch1g1718 Mch-Chr1:17777500 Mch3g1293 Mch-Chr3:15855177 4.67E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77144 PF07714 PK_Tyr_Ser-Thr 5.40E-68 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1718 - - - 0.0