Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1729 ATGGAAGGTCCAAGTGGAGGAGGGGGGAGTTCTTCAGGAATGATGAATTTTGGAGATCAAAACAATAATAATGGGTTATGCAGCTCCATGATGATGATGATGCCTTTAATGTCCTCTCACGGCGGAGATGGCGCATGTAGCTCATTTCTCCCTCTCCCGCCACCACCTCCACCTCACAATTACGAGCCCTCTCCAAATAACAACACCACTAACCCTATTTCTTACTTCATGGAAAACAACAACACCAACAATAACTCCAACAATGAGGGCGCCAATAATGCTGCCTCCTCCTCTTCCTCCTCTCAAGTGAAGGCCAAAATCATGGCCCATCCCCACTACCACCGCCTCCTCGCCGCCTATGTCAATTGCCGCAAGGTGGGGGCGCCGCCGGAAGTGGTGGCGAGGCTAGAGCAAGCGTGTGCCTCTGCAGCAACTATAAGTGGGACGTCGTCGTGTATTGGGGAAGATCCGGCGCTGGACCAGTTTATGGAAGCTTACTGTGAGATGCTGACCAAATATGAGCAAGAACTTTCCAAACCCTTCAGGGATGCCATGCTTTTTCTTCAACGGATCGACTGCCAATTCAAAGCCCTCTCTATCTCCTCCTCCTCCGACGCCGCTTGCGGCGAGGCATTTGACAGGAACGGATCATCCGAAGAAGAAGTCGATATCAACGGCCACTCCATCGATCCCCAAGCCGAAGACCGCGAACTGAAAGGTCAGCTTCTCCGGAAATACAGCGGATACTTGGGCAGTCTCAAGCAAGAATTCATGAAGAAGAGGAAGAAAGGGAAGCTACCCAAGGAGGCTAGACAACAACTTCTTGATTGGTGGAGCAGACATTACAAATGGCCTTACCCATCTGAATCACAGAAGCTAGCTCTAGCCCAATCCACTGGCTTAGATCAGAAGCAAATCAACAACTGGTTCATCAACCAAAGAAAAAGACACTGGAAACCTTCAGAAGACATGCAATTTGTGGTGATGGATGCTGCTCATCCACAGTATTACATGGACACCGTTCTGGGCAATCCTTTTCCCTTGGATATCTCTCCCACTCTACTCTAA 1068 49.63 MEGPSGGGGSSSGMMNFGDQNNNNGLCSSMMMMMPLMSSHGGDGACSSFLPLPPPPPPHNYEPSPNNNTTNPISYFMENNNTNNNSNNEGANNAASSSSSSQVKAKIMAHPHYHRLLAAYVNCRKVGAPPEVVARLEQACASAATISGTSSCIGEDPALDQFMEAYCEMLTKYEQELSKPFRDAMLFLQRIDCQFKALSISSSSDAACGEAFDRNGSSEEEVDINGHSIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAQSTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAAHPQYYMDTVLGNPFPLDISPTLL 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17858038 17862831 + MC01g1302 Mch1g1729 676621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1729 355 SMART KNOX2_2 149 200 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Mch1g1729 355 MobiDBLite consensus disorder prediction 64 103 - -
Mch1g1729 355 Pfam ELK domain 237 258 IPR005539 GO:0003677(InterPro)
Mch1g1729 355 Pfam Homeobox KN domain 277 316 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch1g1729 355 MobiDBLite consensus disorder prediction 47 103 - -
Mch1g1729 355 CDD homeodomain 269 321 IPR001356 GO:0003677(InterPro)
Mch1g1729 355 ProSiteProfiles 'Homeobox' domain profile. 257 320 IPR001356 GO:0003677(InterPro)
Mch1g1729 355 ProSiteProfiles ELK domain profile. 237 257 IPR005539 GO:0003677(InterPro)
Mch1g1729 355 Pfam KNOX2 domain 152 198 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Mch1g1729 355 Gene3D - 262 324 - -
Mch1g1729 355 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 92 327 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Mch1g1729 355 Pfam KNOX1 domain 103 141 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Mch1g1729 355 MobiDBLite consensus disorder prediction 49 63 - -
Mch1g1729 355 FunFam Homeobox protein knotted-1-like 2 262 324 - -
Mch1g1729 355 SMART KNOX1_2 101 145 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Mch1g1729 355 ProSitePatterns 'Homeobox' domain signature. 295 318 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Mch1g1729 355 SMART HOX_1 259 324 IPR001356 GO:0003677(InterPro)
Mch1g1729 355 SMART ELK_2 237 258 IPR005539 GO:0003677(InterPro)
Mch1g1729 355 SUPERFAMILY Homeodomain-like 259 333 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0394 Mch-Chr11:2483045 Mch1g1729 Mch-Chr1:17858038 1.22E-88 dispersed
Mch1g1729 Mch-Chr1:17858038 Mch9g2260 Mch-Chr9:22932845 6.32E-77 dispersed
Mch1g1729 Mch-Chr1:17858038 Mch4g0267 Mch-Chr4:1731981 4.02E-128 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42786 PF03791 KNOX2 1.70E-19 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1729 - - - 0.0