Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch1g1736 | AACCCCATCGACGCATGCTGGCGGAGCAACCCCCATTGGGCAGCCGACCGCCGTGCCTTGGCCGACTGCGCGGTCGGGTTCGGCAAAGATGCAATGGGAGGGAAATTCGGAGTGATCTACGTGGTCACGGACCCGTCGGACGACGAGGAAAATCCCAAGCCCGGGACGCTGCGTTTCGGGGCGATCCAACCGCAGCCATTGTGGATAATATTCGCAAGAGACATGGTGATCAGGCCCAGAAGAGAGCTGATGCTGAGCAGCTTCAAGACCATCGACGGGAGAGGAGCGCACGTGGAGATTGCGTACGGCGCATGCATAACGATTCAGAACGTGAGCCACGTGATCATCCACGGGATCAGCATCCACGACTGCAAGCCCGGGAAGGCCGGGCTGGTGAGGAGCAGCGCCACGCACTATGGGGAGCGCCAACAATCTGACGGCGACGCCATTTCCGTATTTGCGTCTTCCCATATTTGGATCGACCACTGCTCGCTGGCTCGCTGCACTGATGGGCTGATTGACGTCATCCATGCCTCCACTGCCGTCACCATCTCCAACAACTACTTCTCTCAACATGACAAAGTGATCCTTCTTGGGCACAACGATGAATTTACAGCTGACAAAATTATGAGAGTCACTGTAGCTTTCAATCGTTTTGGCGATGGGCTTGTTCAAAGGATGCCCAGGGTGAGATTTGGATATGTCCATGTTGCCAATAATTGGTACAATAAGTGGCAAATGTACGCTGTTGGTGGCAGTGCAGATCCAACCATCTTCAGCCAAGGAAACTACTTCATGGCTCCTGATGACTCTTTTTCAAAACAGGTTACAAAGAGAGAGATTGATGGGTTTGGATGGAAGAAATGGAAATGGAGGTCTTCAAATGATGTGTTTCTGAATGGGGCTTATTTTATCCCATCTGGGTGGGGAACTTGTACCCCACTCTACACTCCAGCTCAATCATTTCCTGTTGCTCATGGCTCTTTAGTTCCCTTTTTGACTGATTCCGCTGGC | 1014 | 52.47 | NPIDACWRSNPHWAADRRALADCAVGFGKDAMGGKFGVIYVVTDPSDDEENPKPGTLRFGAIQPQPLWIIFARDMVIRPRRELMLSSFKTIDGRGAHVEIAYGACITIQNVSHVIIHGISIHDCKPGKAGLVRSSATHYGERQQSDGDAISVFASSHIWIDHCSLARCTDGLIDVIHASTAVTISNNYFSQHDKVILLGHNDEFTADKIMRVTVAFNRFGDGLVQRMPRVRFGYVHVANNWYNKWQMYAVGGSADPTIFSQGNYFMAPDDSFSKQVTKREIDGFGWKKWKWRSSNDVFLNGAYFIPSGWGTCTPLYTPAQSFPVAHGSLVPFLTDSAG | 338 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 17899341 | 17902313 | + | MC01g1309 | Mch1g1736 | 676628 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch1g1736 | 338 | PRINTS | Pollen allergen Amb family signature | 289 | 313 | IPR018082 | - | |
Mch1g1736 | 338 | PRINTS | Pollen allergen Amb family signature | 226 | 245 | IPR018082 | - | |
Mch1g1736 | 338 | PRINTS | Pollen allergen Amb family signature | 23 | 40 | IPR018082 | - | |
Mch1g1736 | 338 | PRINTS | Pollen allergen Amb family signature | 248 | 267 | IPR018082 | - | |
Mch1g1736 | 338 | PRINTS | Pollen allergen Amb family signature | 46 | 71 | IPR018082 | - | |
Mch1g1736 | 338 | PRINTS | Pollen allergen Amb family signature | 146 | 167 | IPR018082 | - | |
Mch1g1736 | 338 | PRINTS | Pollen allergen Amb family signature | 319 | 338 | IPR018082 | - | |
Mch1g1736 | 338 | PRINTS | Pollen allergen Amb family signature | 82 | 98 | IPR018082 | - | |
Mch1g1736 | 338 | SMART | amb_all | 74 | 271 | IPR002022 | - | |
Mch1g1736 | 338 | Pfam | Pectate lyase | 83 | 265 | IPR002022 | - | |
Mch1g1736 | 338 | PANTHER | PECTATE LYASE 18-RELATED | 1 | 338 | IPR045032 | GO:0030570(InterPro) | |
Mch1g1736 | 338 | SUPERFAMILY | Pectin lyase-like | 1 | 338 | IPR011050 | - | |
Mch1g1736 | 338 | Gene3D | - | 1 | 338 | IPR012334 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch1g1736 | Mch-Chr1:17899341 | Mch3g1395 | Mch-Chr3:16452225 | 1.98E-150 | dispersed | |
Mch1g1736 | Mch-Chr1:17899341 | Mch3g1267 | Mch-Chr3:15646586 | 2.19E-198 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch1g1736 | K01728 | - | csv:101210816 | 599.742 |