Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1736 AACCCCATCGACGCATGCTGGCGGAGCAACCCCCATTGGGCAGCCGACCGCCGTGCCTTGGCCGACTGCGCGGTCGGGTTCGGCAAAGATGCAATGGGAGGGAAATTCGGAGTGATCTACGTGGTCACGGACCCGTCGGACGACGAGGAAAATCCCAAGCCCGGGACGCTGCGTTTCGGGGCGATCCAACCGCAGCCATTGTGGATAATATTCGCAAGAGACATGGTGATCAGGCCCAGAAGAGAGCTGATGCTGAGCAGCTTCAAGACCATCGACGGGAGAGGAGCGCACGTGGAGATTGCGTACGGCGCATGCATAACGATTCAGAACGTGAGCCACGTGATCATCCACGGGATCAGCATCCACGACTGCAAGCCCGGGAAGGCCGGGCTGGTGAGGAGCAGCGCCACGCACTATGGGGAGCGCCAACAATCTGACGGCGACGCCATTTCCGTATTTGCGTCTTCCCATATTTGGATCGACCACTGCTCGCTGGCTCGCTGCACTGATGGGCTGATTGACGTCATCCATGCCTCCACTGCCGTCACCATCTCCAACAACTACTTCTCTCAACATGACAAAGTGATCCTTCTTGGGCACAACGATGAATTTACAGCTGACAAAATTATGAGAGTCACTGTAGCTTTCAATCGTTTTGGCGATGGGCTTGTTCAAAGGATGCCCAGGGTGAGATTTGGATATGTCCATGTTGCCAATAATTGGTACAATAAGTGGCAAATGTACGCTGTTGGTGGCAGTGCAGATCCAACCATCTTCAGCCAAGGAAACTACTTCATGGCTCCTGATGACTCTTTTTCAAAACAGGTTACAAAGAGAGAGATTGATGGGTTTGGATGGAAGAAATGGAAATGGAGGTCTTCAAATGATGTGTTTCTGAATGGGGCTTATTTTATCCCATCTGGGTGGGGAACTTGTACCCCACTCTACACTCCAGCTCAATCATTTCCTGTTGCTCATGGCTCTTTAGTTCCCTTTTTGACTGATTCCGCTGGC 1014 52.47 NPIDACWRSNPHWAADRRALADCAVGFGKDAMGGKFGVIYVVTDPSDDEENPKPGTLRFGAIQPQPLWIIFARDMVIRPRRELMLSSFKTIDGRGAHVEIAYGACITIQNVSHVIIHGISIHDCKPGKAGLVRSSATHYGERQQSDGDAISVFASSHIWIDHCSLARCTDGLIDVIHASTAVTISNNYFSQHDKVILLGHNDEFTADKIMRVTVAFNRFGDGLVQRMPRVRFGYVHVANNWYNKWQMYAVGGSADPTIFSQGNYFMAPDDSFSKQVTKREIDGFGWKKWKWRSSNDVFLNGAYFIPSGWGTCTPLYTPAQSFPVAHGSLVPFLTDSAG 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17899341 17902313 + MC01g1309 Mch1g1736 676628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1736 338 PRINTS Pollen allergen Amb family signature 289 313 IPR018082 -
Mch1g1736 338 PRINTS Pollen allergen Amb family signature 226 245 IPR018082 -
Mch1g1736 338 PRINTS Pollen allergen Amb family signature 23 40 IPR018082 -
Mch1g1736 338 PRINTS Pollen allergen Amb family signature 248 267 IPR018082 -
Mch1g1736 338 PRINTS Pollen allergen Amb family signature 46 71 IPR018082 -
Mch1g1736 338 PRINTS Pollen allergen Amb family signature 146 167 IPR018082 -
Mch1g1736 338 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Mch1g1736 338 PRINTS Pollen allergen Amb family signature 82 98 IPR018082 -
Mch1g1736 338 SMART amb_all 74 271 IPR002022 -
Mch1g1736 338 Pfam Pectate lyase 83 265 IPR002022 -
Mch1g1736 338 PANTHER PECTATE LYASE 18-RELATED 1 338 IPR045032 GO:0030570(InterPro)
Mch1g1736 338 SUPERFAMILY Pectin lyase-like 1 338 IPR011050 -
Mch1g1736 338 Gene3D - 1 338 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1736 Mch-Chr1:17899341 Mch3g1395 Mch-Chr3:16452225 1.98E-150 dispersed
Mch1g1736 Mch-Chr1:17899341 Mch3g1267 Mch-Chr3:15646586 2.19E-198 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1736 K01728 - csv:101210816 599.742