Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1738 ATGGACAAAGGATGGGGCCTAACCCTCCGTGATTCTGAGTCTATTGGGTTCTTCTCAAACAAGCCTCCCACTTCTGGGGATTTGAATTACCGACACCCCACCATTAGAATGTTCCAAGGGATTGAATTTCCGGGCAAGCTTGGCCGGACTGATCACGACGACGCTGCTGCTCCCACGCCGCCCGACGACAACAACCGCTTGGCCGTCAACGAGGTTGATTTCTTTTCCGACAACAAAAGAGTGCTTGACGATCGGGAGGATCATCAAGACTCCAAACCCACAAATATTGTCACCACCACCACCGGTGTCAATAAATTAGAAGACAAGATTTTGGCACCTCCCAGGCCTGCCTTCAATATTGTAAACACTGGTTTGCACCTGCTGACTGCTAATACCGGAAGCGATCAATCCACGGTGGATGATGGGATTTCATCGGATGGTGAAGACAAGCGAGCCAAAAACGAGCTAGCGCAGCTTCAAGTGGAGCTGCAGCGTATGAACGCCGAGAATCACAAGCTGAGGGACATGCTAAGCCATGTGAGCAACAATTACAGTACCCTACAAATGCATCTCTTTACCTTAATGCAACAGCAGCCGAATCAGGCATCGGAACCACCTGCGCATGCCCATGAGCGAGAGATTGGGGAGAAGAAACCGGGAGAAAAACAAGATCAAGTTGGAAGGGTGCAGGTGGTACCGAGGCAATTTATGGATCTAGGACCCAGTGGGACAGCCGAAACCGACGAGTTATCCAATTCTTCATCGGACGAAAGAACTCGTTCCGGGTCTCCATTGAACAACGCGGCGGAAACCGCCTCAAAAAAGAGCAGTGGGAGAGATCAGGAGATGCCTCCCAGCTTTGATCATCAGGACAATAATTCCAATTTCAGATCAGACAACAAAAGATCCATTGGTGGCAGAGAAGAAAGCCCCGAGTCTGAATCCCACGCTTGGGGACCTAATAAAGCCCCCAGATTGAACTCTTCAAAACCACTCGATCAATCAACAGAAGCCACCATGAGAAAAGCACGTGTCTCCGTCCGTGCTCGATCAGAAGCGCCCATGATTTCTGATGGATGTCAATGGCGAAAATATGGCCAGAAAATGGCTAAAGGAAACCCGTGTCCACGGGCTTATTATCGCTGCACAATGGCAGTTGGCTGCCCAGTTCGCAAACAAGTCCAACGTTGCGCTGAGGATAGGAGTATATTGATAACAACATATGAAGGGAACCACAACCACCCACTTCCGCCGGCGGCGATGGCGATGGCGTCAACCACGACGGCGGCGGCGAGCATGTTGTTATCGGGGTCCATGTCCAGTGCGGACCATAGCCTAATGAACCCCAATTTACTGGCTCGAGCCATACTTCCATGCTCGTCGAGCATGGCCACGATTTCAGCATCGGCTCCATTTCCCACCATCACACTAGACCTCACTCACACCCCAAACGCTCTACAATTCCAAAGACCGGCGGCGGCCCCGTTCCACGTGCCCTTCCCGGCCGGCCAACCACCGTCAGCCGCCGCCGCCCAATTGCCGCAGGTCTTGGGGCAGGCTCTGTACAACCAATCGAAATTCTCCGGGCTACAGCTGTCTCACGAGATGGGAGTGGGAGGGGGAGGGCCCAATAATTCCCATTTGGGCCACCCCCAAATTGCACAGCCGGCCCAGCCTGGGGCCGCCTCCTTCGCCGACACGTTGAGTGCAGCTACGGCCGCTATCACCGCCGATCCAAACTTCACCGCCGCTCTCGCCGCCGCCATCTCCTCCATCATCGGCGGCGCTCATTCCAATAATAATAACAACAACAATAATACCCCCACCACCACCACCACCACAAACAACAACAACAACGGAAGCACCAACATGACGTCAAGCAACAGCAGCAAAATTAGCAGTTTCCCAGGAAATTAA 1917 52.9 MDKGWGLTLRDSESIGFFSNKPPTSGDLNYRHPTIRMFQGIEFPGKLGRTDHDDAAAPTPPDDNNRLAVNEVDFFSDNKRVLDDREDHQDSKPTNIVTTTTGVNKLEDKILAPPRPAFNIVNTGLHLLTANTGSDQSTVDDGISSDGEDKRAKNELAQLQVELQRMNAENHKLRDMLSHVSNNYSTLQMHLFTLMQQQPNQASEPPAHAHEREIGEKKPGEKQDQVGRVQVVPRQFMDLGPSGTAETDELSNSSSDERTRSGSPLNNAAETASKKSSGRDQEMPPSFDHQDNNSNFRSDNKRSIGGREESPESESHAWGPNKAPRLNSSKPLDQSTEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRSILITTYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADHSLMNPNLLARAILPCSSSMATISASAPFPTITLDLTHTPNALQFQRPAAAPFHVPFPAGQPPSAAAAQLPQVLGQALYNQSKFSGLQLSHEMGVGGGGPNNSHLGHPQIAQPAQPGAASFADTLSAATAAITADPNFTAALAAAISSIIGGAHSNNNNNNNNTPTTTTTTNNNNNGSTNMTSSNSSKISSFPGN 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17926845 17929924 + MC01g1311 Mch1g1738 676630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1738 638 MobiDBLite consensus disorder prediction 596 638 - -
Mch1g1738 638 MobiDBLite consensus disorder prediction 245 274 - -
Mch1g1738 638 Coils Coil 149 183 - -
Mch1g1738 638 MobiDBLite consensus disorder prediction 301 315 - -
Mch1g1738 638 SUPERFAMILY WRKY DNA-binding domain 349 417 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch1g1738 638 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 139 601 IPR044810 GO:0003700(InterPro)
Mch1g1738 638 FunFam probable WRKY transcription factor 31 341 418 - -
Mch1g1738 638 ProSiteProfiles WRKY domain profile. 351 417 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch1g1738 638 MobiDBLite consensus disorder prediction 327 341 - -
Mch1g1738 638 MobiDBLite consensus disorder prediction 533 560 - -
Mch1g1738 638 MobiDBLite consensus disorder prediction 198 342 - -
Mch1g1738 638 SMART WRKY_cls 356 416 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch1g1738 638 MobiDBLite consensus disorder prediction 206 224 - -
Mch1g1738 638 MobiDBLite consensus disorder prediction 44 65 - -
Mch1g1738 638 Gene3D WRKY domain 341 418 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch1g1738 638 Pfam WRKY DNA -binding domain 358 415 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0518 Mch-Chr10:3383563 Mch1g1738 Mch-Chr1:17926845 1.74E-40 dispersed
Mch1g1738 Mch-Chr1:17926845 Mch6g0215 Mch-Chr6:1447524 2.08E-43 dispersed
Mch1g1738 Mch-Chr1:17926845 Mch4g0252 Mch-Chr4:1653792 1.47E-139 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42787 PF03106 WRKY 3.70E-24 CL0274 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1738 - - - 0.0