Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1740 ATGGAGTGGACGAGAGGCCGGACCATTGGCCGTGGCTCCACCGCCGCGGTCTCCGTCGCCACTGATCTCCGCTCCGGCCGAGTCATGGCGGTCAAATCTGTTGAGTTCCCGCACTCGGATTCTCTGCAAAGGGAACGGAGGATTCTCTCTGAATTGGATTGCCTACATGTTGTGGCTTATAAAGGGTATGACGTTACGTTGGAAAATGGGAGATTGATGTGCAATCTTTTCATGGAATTTGCGCCTGGTGGGTCGATTTTGGACGCCATGGAGAGGGCCGGCGGCCGATTAGACGAGGCCATGGTCCAATTGTATGCTCGAGAGGTTCTGATTGGGCTCCAGTATCTTCATTCTAAGGGTGTGGTGCACTGTGATATTAAGTGTCATAATATTTTGGTCGGTGAAGGAGGGGTTAAGATAGCCGATTTTGGATGCGCGCGGCGCGTGGAGGAGGTTTCCGGTGGGAGTTTGGCCGGAACGCCGATATTTATGGCACCGGAGGTGGCGCGTGGAGAAGGACAGGGGTTTGCAGCTGATGTCTGGGCCGTCGGATGCACGGTGATCCAGATGGTGACCGGCAGGGCTCCGTGGGCGGATGTGTCCGATCCGGTGGCGGCGCTTTACAGAATTGGGTCCGGCGTGGAGTTGCCGGAGATTCCGAGGTTCATGTCGGAGGAAGGGAGGGACTTTTTGCGCCGGTGTTTGATCAGACACCCAGAAGAACGGTGGTCTGTTGGTGAACTTCTGAAACACCCTTTTGTTCGCGAGCAGAAATCTTGTTCGAAGCAGAATTCAAGAACACCGACGAGTATCTTGGAACAAGGATTCTGGGACACCATAAACGACTCGGAAACGCTTCAAACTCCGACCAGACCAAAAATTTACAGAACGCCATTGCAGAGAATACAGCAACTGAGTGAAGTGTGCAAAATTCAGTCTTTTGGGATACCCAATTGGGAGTCCGAGTGCGACGAAAATTGGGAAACAGTAAGAAGCAGAGAAAAAAGCGATTGCGTTAATGGATCGGAATTGCCCTGTTCCTCTGAATCCATGGCAATGGCAACTGAAATTGGAATTGGTAATTGGAACTATGTTAGTATTAGCATTAGTAGAAGCAGTAATTGTAGCAATAAAATCAGTAAGGCCAAGAAGAGGGACTTGCCAATGACCTCTGTTTGCAATGTAACATTGAAAACTATTGATTTTTCTTATGATGAGAAATTATGTATTGTCATTTCTTTGTTTCTTGTCTTT 1254 49.44 MEWTRGRTIGRGSTAAVSVATDLRSGRVMAVKSVEFPHSDSLQRERRILSELDCLHVVAYKGYDVTLENGRLMCNLFMEFAPGGSILDAMERAGGRLDEAMVQLYAREVLIGLQYLHSKGVVHCDIKCHNILVGEGGVKIADFGCARRVEEVSGGSLAGTPIFMAPEVARGEGQGFAADVWAVGCTVIQMVTGRAPWADVSDPVAALYRIGSGVELPEIPRFMSEEGRDFLRRCLIRHPEERWSVGELLKHPFVREQKSCSKQNSRTPTSILEQGFWDTINDSETLQTPTRPKIYRTPLQRIQQLSEVCKIQSFGIPNWESECDENWETVRSREKSDCVNGSELPCSSESMAMATEIGIGNWNYVSISISRSSNCSNKISKAKKRDLPMTSVCNVTLKTIDFSYDEKLCIVISLFLVF 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17944291 17945544 + MC01g1313 Mch1g1740 676632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1740 418 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 255 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Mch1g1740 418 SMART serkin_6 3 254 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g1740 418 Gene3D Transferase(Phosphotransferase) domain 1 2 312 - -
Mch1g1740 418 SUPERFAMILY Protein kinase-like (PK-like) 3 295 IPR011009 -
Mch1g1740 418 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g1740 418 CDD STKc_MAPKKK 2 254 - -
Mch1g1740 418 Pfam Protein kinase domain 4 254 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g1740 418 ProSiteProfiles Protein kinase domain profile. 3 254 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g1740 418 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1740 Mch-Chr1:17944291 Mch3g0089 Mch-Chr3:1034432 1.70E-59 dispersed
Mch6g0708 Mch-Chr6:4861230 Mch1g1740 Mch-Chr1:17944291 1.92E-06 transposed
Mch1g1740 Mch-Chr1:17944291 Mch11g1202 Mch-Chr11:8465163 2.43E-95 wgd
Mch1g1740 Mch-Chr1:17944291 Mch2g0539 Mch-Chr2:3790771 9.35E-109 wgd
Mch1g1740 Mch-Chr1:17944291 Mch4g0251 Mch-Chr4:1645099 2.57E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77145 PF00069 Pkinase 6.50E-52 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1740 K20716 - csv:101210574 573.933