Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1747 ATGGGGAAGAAGAAACTGAGGCTGCAAACTCAAGACTCCAATGTCAGTCAGCCTCATGGCTCTTATTTCCTTGTGATCATATTCTCTGTAATCCATGTGAGTTATGATTTTTTGCAGGTTATATTGGACAATGGATTGTTGAAAGTGACAATATCAAACCCCCAAGGATATGTAAGTGGTATCAAGTATGGAGGCATGGACAATTTGTTAGATGTAAAATCAAGCGAATCTAAGAGAGGATACTGGGATATCAATTGGAGTTGGCCTGGAGGCAAGGACAGATACCAACTGCTTAAAGGATCTGAATTTAATGTAATCAACACAAGTGATGACATCATCGAGCTATCGTTCAAGAAAGTTTTTAACCAGTCGAGTCAAGGCAACAAACTTCCCCTTGGAGTAGACATAAGGTATGTAATGAGGACTGGTATTCCAGGCTTCTATTGCTACGCGATCTATGAGCACCCTTCGGAATGCCGGGCGTTCGATCTTGCTCAGACAAGGATGGTGTTTAAATTGCGAAAAGAGAAGTTCCACTACATGGCAATTTCAGATGAGAAGCAAAGAATAATGCCAATGCCAGAGGATTTGCATCGAGGCAGAGGTGAACAACTAATTGTACCTGAGTCAGTCTTGCTTGTAAATCCTATTAATCCTGATCTGAAAGGAGAGGTAGATGATAAGTACCAATACTCAGTGGATAACAAAGATGGAGGAGTTCATGGATGGATAAGTTCAAGCCCAAACAACATAGGTTTTTGGGTAGTTTTCCCGAGCCATGAGTTTCGAAATGGTGGCCCTACTAAGCAAAATCTAACCGTCCACACCGGTCCTACCTGCCTGGCTATGTTTCATGGAACCCATTACATTGGAGAAGACATACTCACACAAATTAAGGAGGGAGAGACATGGAGAAAGGTGTTTGGTCCTTTTCTTGTATACCTTAACTCCACCCCAGATGTATCAGAAGCACACAATTTATGGATAGATGCAAAAGAACAGAGAATGCTAGAGGAGGAGGCATGGCCCTATGATTTTGTCTCTTCTTCCTTTTATTTCATAGCAAATGAACGTGGTTCCATTTCAGGAAGACTATTAGTCCAAGACAGGTATGTTTCAAGTTCCTCAATCCCTGCTAGAGATGCACATATTGGTTTATCCGCTGCTAGGGAAGAAGGTGCCTGGCAAACAGAGAGCAAGGAATATCAATTTTGGGTACAAACAGATTCCAATGGAGATTTCACCATCAGAAACATTATTCCTGGAGTCTATGGGCTTCATGGTTGGGTACCAGGATTCATTGGGGATTATCTTCACAAATCACTAGTAACAGTATCTGCAGGATCTCATACACATCTAGGCATTCTGACCTACAGTCCCCTCAGAGATGGTCCTACTTTGTGGGAGATCGGCTTTCCCAACCGTACAGCCAATAGCTTCTATGTTCCTGATGTGAATCCAATGTATGCCAACAAGTTATTTCTTCACAGCCATGAAAAGTTCAGGCAATATGGTTTATGGGAGAGATACAGTGATTTACATCCAAAAGACGACCAAGTTTTCACTGTGGGTATCAACGATCCGAAGAAAGACTGGTTCTTTGCTCAAGTTTGCAGAAGAAGGGAAGATGGTGAGTATGTTGCGACGACATGGACAATCAAGTTCAACATAACATCATTAACTGATGGAACTTACCGGCTGAGATTAGCCATTGCATCTGCAACACGCTCAGACTTGAAGATTAATGTCAACTCAATGGGGTCAGAGTCTCTGGTTTTCCAGCTGATGAATCTGGGAATGGATAACACAGTTTGTCGACATGGAAATCATGGGCTGTATCGGCTTTATAGCATCAACGTTCCATCTTCAATGCTTGTAAAGGGAGACAACTCCATGTTTCTCACGCAGGCAAGGAATGGAGATTCACTCTGTGGGATTTTATACGATTACTTAAGACTGGAAGCTCCTGAT 1971 42.31 MGKKKLRLQTQDSNVSQPHGSYFLVIIFSVIHVSYDFLQVILDNGLLKVTISNPQGYVSGIKYGGMDNLLDVKSSESKRGYWDINWSWPGGKDRYQLLKGSEFNVINTSDDIIELSFKKVFNQSSQGNKLPLGVDIRYVMRTGIPGFYCYAIYEHPSECRAFDLAQTRMVFKLRKEKFHYMAISDEKQRIMPMPEDLHRGRGEQLIVPESVLLVNPINPDLKGEVDDKYQYSVDNKDGGVHGWISSSPNNIGFWVVFPSHEFRNGGPTKQNLTVHTGPTCLAMFHGTHYIGEDILTQIKEGETWRKVFGPFLVYLNSTPDVSEAHNLWIDAKEQRMLEEEAWPYDFVSSSFYFIANERGSISGRLLVQDRYVSSSSIPARDAHIGLSAAREEGAWQTESKEYQFWVQTDSNGDFTIRNIIPGVYGLHGWVPGFIGDYLHKSLVTVSAGSHTHLGILTYSPLRDGPTLWEIGFPNRTANSFYVPDVNPMYANKLFLHSHEKFRQYGLWERYSDLHPKDDQVFTVGINDPKKDWFFAQVCRRREDGEYVATTWTIKFNITSLTDGTYRLRLAIASATRSDLKINVNSMGSESLVFQLMNLGMDNTVCRHGNHGLYRLYSINVPSSMLVKGDNSMFLTQARNGDSLCGILYDYLRLEAPD 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17975037 17978635 + MC01g1320 Mch1g1747 676639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1747 657 CDD RGL4_N 38 324 - -
Mch1g1747 657 Pfam Polysaccharide lyase family 4, domain III 466 653 IPR029411 -
Mch1g1747 657 Pfam Polysaccharide lyase family 4, domain II 382 452 IPR029413 -
Mch1g1747 657 Gene3D - 354 456 - -
Mch1g1747 657 Gene3D - 32 330 IPR014718 GO:0030246(InterPro)
Mch1g1747 657 Pfam Rhamnogalacturonate lyase family 38 225 IPR010325 -
Mch1g1747 657 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 38 656 IPR051850 -
Mch1g1747 657 CDD RGL4_C 468 654 - -
Mch1g1747 657 CDD RGL4_M 357 454 IPR029413 -
Mch1g1747 657 Gene3D - 464 654 - -
Mch1g1747 657 SUPERFAMILY Galactose-binding domain-like 463 654 IPR008979 -
Mch1g1747 657 SUPERFAMILY Starch-binding domain-like 353 455 IPR013784 GO:0030246(InterPro)
Mch1g1747 657 SUPERFAMILY Galactose mutarotase-like 41 318 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0720 Mch-Chr11:4797070 Mch1g1747 Mch-Chr1:17975037 2.49E-237 dispersed
Mch1g1361 Mch-Chr1:15568781 Mch1g1747 Mch-Chr1:17975037 1.11E-217 dispersed
Mch1g1747 Mch-Chr1:17975037 Mch8g0257 Mch-Chr8:1723657 8.15E-241 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1747 K18195 - csv:101220336 1187.94