Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1756 ATGGCTTGCTCAAACTTCACAATGTGGGTCTCCTCAAAACCGTCTCTATCCGACGCCTCCGCACTTTCTTTCCGGCCTTTCAACCCTCTTCATAATCCGGCTCAGGGCTCCCCCGCCGGCAATGCCTCGCGATTTTCATCTGTCACTCCGATTCAGTGCGGTCTTCGTGAGCTCCGAGAACGAATCGATTCGGTGAAGAACACCCAGAAAATTACCGAGGCTATGAAGCTTGTTGCTGCTGCAAAAGTGCGTAGAGCTCAAGAAGCTGTTGTTAACGGAAGACCATTTTCGGAATCTCTCGTTGAAGTTCTTTACAGTATCAACGAGCAGCTCCAAACCGAAGATATAGACGTTCCTCTGACAAAAGTCCGACCGGTCAAGAAGGTTGCTCTGGTTGTTGTTACTGGGGATCGAGGTCTTTGCGGCGGTTTCAATAACTCGATCATCAAAAAGGCAGAAGCCAGAATCGCAGAATTGAAGAACCTTGGCCTTGACTATACTGTAATTAGCGTCGGTAAGAAGGGGAACTCGTATTTCCTTCGCCGGCCTTACATTCCAGTCGACAGATTCCTCGAGGGCGGCTCACTTCCCACAGCTAAGGAAGCCCAAGCCATAGCAGACGACGTTTTTTCCCTCTTTATCAGCGAAGAGGTCGATAAAGTCGAGCTTCTTTACACCAAATTCGTGTCATTGGTTAAATCCGACCCCGTGATCCACACTTTGCTTCCACTCTCACCAAAGGGAGAGATTTGTGACATTAATGGCGTTTGCGTGGATGCCGCAGAGGACGAATTCTTCAGATTGACGACAAAGGAAGGAAAATTGACCGTAGAGAGAGATGCCGTGAGGACAAAAACCTCAGAATTCTCCCCAATTTTGGAGTTTGAGCAGGACCCAGTTCAGATTCTTGATGCTTTATTACCTCTCTACTTGAACAGTCAAATTTTGAGGTCATTACAGGAGTCATTAGCAAGTGAGCTCGCGGCCAGAATGAGCGCCATGAGCAATGCGACTGATAATGCAAGCGAGTTGAAGAAGACGCTCTCAATTGTCTACAACAGACAGCGCCAAGCCAAGATCACTGGCGAGATATTGGAGATTGTTGCTGGTGCCAACGCTTTGACTTAA 1128 48.14 MACSNFTMWVSSKPSLSDASALSFRPFNPLHNPAQGSPAGNASRFSSVTPIQCGLRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSESLVEVLYSINEQLQTEDIDVPLTKVRPVKKVALVVVTGDRGLCGGFNNSIIKKAEARIAELKNLGLDYTVISVGKKGNSYFLRRPYIPVDRFLEGGSLPTAKEAQAIADDVFSLFISEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDINGVCVDAAEDEFFRLTTKEGKLTVERDAVRTKTSEFSPILEFEQDPVQILDALLPLYLNSQILRSLQESLASELAARMSAMSNATDNASELKKTLSIVYNRQRQAKITGEILEIVAGANALT 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18020116 18023383 - MC01g1329 Mch1g1756 676648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1756 375 Gene3D ATP synthase, gamma subunit, helix hairpin domain 54 121 - -
Mch1g1756 375 ProSitePatterns ATP synthase gamma subunit signature. 360 373 IPR023632 -
Mch1g1756 375 Hamap ATP synthase gamma chain [atpG]. 52 374 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Mch1g1756 375 PRINTS ATP synthase gamma subunit signature 126 145 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Mch1g1756 375 PRINTS ATP synthase gamma subunit signature 219 236 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Mch1g1756 375 PRINTS ATP synthase gamma subunit signature 352 373 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Mch1g1756 375 PRINTS ATP synthase gamma subunit signature 321 340 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Mch1g1756 375 Coils Coil 55 75 - -
Mch1g1756 375 Pfam ATP synthase 55 374 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Mch1g1756 375 FunFam ATP synthase gamma chain, chloroplastic 271 374 - -
Mch1g1756 375 Gene3D ATP synthase, gamma subunit, helix hairpin domain 270 374 - -
Mch1g1756 375 CDD F1-ATPase_gamma 55 371 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Mch1g1756 375 PANTHER ATP SYNTHASE GAMMA CHAIN 1 374 IPR000131 GO:0000275(PANTHER)|GO:0009535(PANTHER)|GO:0015986(PANTHER)|GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)|GO:0046933(PANTHER)
Mch1g1756 375 NCBIfam ATP synthase F1 subunit gamma 54 374 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Mch1g1756 375 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 54 374 IPR035968 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Mch1g1756 375 FunFam ATP synthase gamma chain, chloroplastic 53 120 - -
Mch1g1756 375 FunFam ATP synthase gamma chain, chloroplastic 122 245 - -
Mch1g1756 375 Gene3D - 122 245 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1756 Mch-Chr1:18020116 Mch3g1697 Mch-Chr3:18536530 4.31E-18 dispersed
Mch1g1756 Mch-Chr1:18020116 Mch3g1242 Mch-Chr3:15500801 3.53E-217 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1756 K02115 - csv:101218747 657.136