Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1770 ATGATCTCTTCACTACGCCTCACCACTCCCAATTTCACTTCCTCTGAACTTTTCAACCGAAAATCCCCGCTTCCCAGGCCGCAACTTCCTCAGCAATCCCTCAATCGCAGTGCCCTAAACCATCAATTTCTCGATCGCTCTCTTTCCACCGGGAAACCGCTTTACATCTCGTCCGTTGAGAATCTTTCTTCGCCGCGTTCCACTGAGTGCAGGGCATTTGAGGCCGACTCCCGCCCTCTTCACATTAACATCGAGCTTCCCGATGAACGCGCCGCTCAGAAACTCAAAATCGGCCTCTATTTCGCCACTTGGTGGGCTTTGAACGTCGTCTTTAATGTCTACAACAAGAAGGTTCTCAATGCGTTTCCTTATCCATGGCTCACCTCCACCCTCTCCCTCACTGCTGGATCGCTCATCATGCTCGTTTCCTGGGCCACCAGAATGGCCCACCCGCCTAAAACCGATTTCGATTTCTGGAAATCTCTATTGCCGGTGGCAGTGGCGCATACCATTGGGCACGTCGCGGCAACTGTGAGCATGTCCAAAGTGGCAGTTTCATTCACTCACATAATAAAGAGCGGGGAGCCGGCTTTCAGTGTGTTGGTGTCCAGGTTTGTTCTGGGTGACGCGTTTCCATTGCCTGTTTACTTATCACTCATCCCAATCATTGGGGGCTGCGCTCTTTCCGCCGCAACCGAGCTCAATTTCAACATGACTGGTTTCATGGGAGCGATGGTATCGAATATGGCATTCGTGTTCCGGAACATATTCTCAAAGAAAGGGATGAAGGGGAAGTCAGTGAGTGGGATGAATTACTACGCTTGCCTTTCTTTGCTGTCTCTGCTGATTCTCACGCCTTTCGCCATTGCTGTGGAGGGGCCCAAGTTGTGGGCTGCAGGGTTTCAAAAGGCTCTCTCTCAAATTGGTCCCAATTTCATATGGTGGTTGGGAGCCCAAAGTATGTTCTACCACTTGTACAATCAAGTGTCGTACATGTCTCTTGATGAGATATCTCCATTGACATTCAGCGTAGGAAACACAATGAAGAGAATATTTGTAATAGTGTCGTCCATTATCATCTTCCACACCCCTGTCCGACCCATCAACGCCATTGGAGCTGCCATTGCAATCCTCGGCACCTTCCTCTACTCCCAGGCAAAGCTGTGA 1167 50.13 MISSLRLTTPNFTSSELFNRKSPLPRPQLPQQSLNRSALNHQFLDRSLSTGKPLYISSVENLSSPRSTECRAFEADSRPLHINIELPDERAAQKLKIGLYFATWWALNVVFNVYNKKVLNAFPYPWLTSTLSLTAGSLIMLVSWATRMAHPPKTDFDFWKSLLPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFVLGDAFPLPVYLSLIPIIGGCALSAATELNFNMTGFMGAMVSNMAFVFRNIFSKKGMKGKSVSGMNYYACLSLLSLLILTPFAIAVEGPKLWAAGFQKALSQIGPNFIWWLGAQSMFYHLYNQVSYMSLDEISPLTFSVGNTMKRIFVIVSSIIIFHTPVRPINAIGAAIAILGTFLYSQAKL 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18083541 18086004 - MC01g1341 Mch1g1770 676662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1770 388 PANTHER SOLUTE CARRIER FAMILY 35 93 387 IPR050186 GO:0005794(PANTHER)|GO:0015120(PANTHER)|GO:0015297(PANTHER)|GO:0071917(PANTHER)
Mch1g1770 388 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 95 387 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Mch1g1770 388 SUPERFAMILY Multidrug resistance efflux transporter EmrE 137 230 - -
Mch1g1770 388 Pfam Triose-phosphate Transporter family 95 384 IPR004853 -
Mch1g1770 388 SUPERFAMILY Multidrug resistance efflux transporter EmrE 283 385 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1237 Mch-Chr10:9967891 Mch1g1770 Mch-Chr1:18083541 2.96E-192 dispersed
Mch1g1770 Mch-Chr1:18083541 Mch5g0285 Mch-Chr5:1948274 3.96E-109 dispersed
Mch1g1894 Mch-Chr1:18908375 Mch1g1770 Mch-Chr1:18083541 2.43E-76 transposed
Mch9g2077 Mch-Chr9:21833395 Mch1g1770 Mch-Chr1:18083541 2.76E-78 transposed
Mch1g1770 Mch-Chr1:18083541 Mch11g1168 Mch-Chr11:8215615 2.94E-194 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1770 K15283 - csv:101216621 603.594