Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1771 ATGTTCGATCCAGATATGTTCGAGCAGCAGCACCATCATATGCTGGACATGGCCTTCAACACCTCCGAAAACGAGCTGGAAAATGTTAGAGACGACGAGTTCGAGACCAAATCGGGAGCTGAAATCCTAAACGCCGACCACCGCTCCAAGAAGAAGCGTTACAATCGCCATACGCAGCACCAAATTCAAGAAATGGAAGCGTTTTTTAAGGAGTGTCCTCACCCAGATGACAAGCAGAGAATGGAACTGAGCCGTGAGCTGGGGTTGGAGCCGTTGCAAGTCAAGTTTTGGTTTCAGAACAAGCGCACCCAGATGAAGGCTCAACATGAAAGACACGAGAACGCGATTTTAAAAGCTGAGAATGAGAAGCTTCGTGGTGAGAATATTCGGTACAGGGAAGCGCTGGCGCATTCCACGTGCCCAAACTGCGGAAGCTCCACGGCGGCGCTGGGCGAAATGTCGTTCGACGACCAACATCTCCGCATTGAAAACTCGCGTTTGCGAGAAGAGATCGACAGAATGAGCGGATATGGGCCAAAATGCGTGGCGAAGCCTCTAGCTTCTTCGTACTACCACCTGCCGTCGAATACTCCGGCGCGATCGCTTGACCTCGGAATCGCAAATTTCGGGCAACAGACGGGCTTCGTCGGGGAAATGTACGGCGCCGCCGATTTTCTGCTGTCGGTTTCGAGACCTTCGGAAGCCGACAAGCCCGTAATCGTTGAGCTCGCCGTTTCCGCCATGGAGGAATTGACCAGAATGGCCCAGGCTGGCGAACCCTTGTGGGTCCCAGGTGATAACAAGTCCACTGAGCTGCTGCTGAACGAGGCCGAGTATTTGTCCACTTTCCGAGGCGGAATCGGCCCAAAACCATTGGGCTTCAGAACCGAAGCCTCACGAGTTTCCGCTATCGTCTTCATGAACCATCTCAAGCTTGTCGATATTTTCATGGACGCCACGCAATGGTCGACTGTGTTCTGTAGCATCGTTTCAAGAGCATCCAATGTGGAACTTCTTTCTGCTGGCCTCCCCGGAAACTGCAACGGGGCCTTGCACGTGATGAGCGCTGAATTCCAAGTCCCGTCCCCGCTGGTTCCGACCCGTGAAAATTACTTCGTAAGATACTGCAAACAGCTGAACGATGCCACGTGGGCTGTGGCTGATGTTTCCTTGGACAGTTTGCGCCCTTCTCCCATCCCAAAGAGTCGGAGGAGACCCTCTGGTTGTTTAATTCAAGAACTGCCCAACGGCTACTCAAAGATTACTTGGGTGGAACACGTGGAGGTGGATGAAACTGGCGTGCCCACCATGTACAGGCCATTGGTCAGTTCAGGGCTCGCTTATGGTGCTAAACGCTGGGTCGCCACCTTAGACAGGCAATGTGAGCGTCTCGCTACTTCAATGGCCACCACCATAGCCACCGCCGATTTACGCGTGATATCAAGTATTGAAGGGAGGAGAAGTATGCTGAAGCTGGCGGAGAGGATGGTGACGAGCTTCTCCGCTGGCGTCGGCGCGTCGAGTGTGCACGCTTGGACCGCCTTGCCGGCCGCCGGCAGTGATGACGTCAGGGTCGTCACTAGGAAGAGCACCGACGAACCGGGCCGCCCTCCTGGCGTTGTGCTCAGCGCCGCCACTTCTTTTTGGATCCCTGTTCCTCCCAAGGTTGTCTTTGATTTCCTCCGGAAAGAGAAATCTCGAAGCGAGTGGGACATTCTGTCGAATGGAGGACTGGTTCAGGAAATGGCGCACATATCCAACGGCCGCCACTCCGGAAACTGCGTCTCTTTGCTGCGCGTCAACAGTGCAAATTCGAGCCAGAGCAACATGCTGATACTACAAGAAAGCTGCACCGACTCCACAGGCTCTTACGTCATCTATGCTCCAGTGGACACTGTGGCCATGAACGTGGTCCTAAGCGGCTGCGATCCTGACTACGTGGCACTTCTGCCCTCCGGATTCGCCATACTTCCCGACGGACCCAACGCCGGACCCAGCGCCGGAGGAATTCTGGAGCTCGGCTCCGGTGGTTCACTCATCACTGTTGCATTTCAAATCCTGGTCGATTCCGTTCCAACGGCTAGACTTTCCATTGGATCGGTCGCCACCGTTAACAGCCTAATTAAGTGCACAGTCGAGAGGATCCGCGCCGCTGTGATGCGTGAAAACCCATAA 2175 54.48 MFDPDMFEQQHHHMLDMAFNTSENELENVRDDEFETKSGAEILNADHRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFWFQNKRTQMKAQHERHENAILKAENEKLRGENIRYREALAHSTCPNCGSSTAALGEMSFDDQHLRIENSRLREEIDRMSGYGPKCVAKPLASSYYHLPSNTPARSLDLGIANFGQQTGFVGEMYGAADFLLSVSRPSEADKPVIVELAVSAMEELTRMAQAGEPLWVPGDNKSTELLLNEAEYLSTFRGGIGPKPLGFRTEASRVSAIVFMNHLKLVDIFMDATQWSTVFCSIVSRASNVELLSAGLPGNCNGALHVMSAEFQVPSPLVPTRENYFVRYCKQLNDATWAVADVSLDSLRPSPIPKSRRRPSGCLIQELPNGYSKITWVEHVEVDETGVPTMYRPLVSSGLAYGAKRWVATLDRQCERLATSMATTIATADLRVISSIEGRRSMLKLAERMVTSFSAGVGASSVHAWTALPAAGSDDVRVVTRKSTDEPGRPPGVVLSAATSFWIPVPPKVVFDFLRKEKSRSEWDILSNGGLVQEMAHISNGRHSGNCVSLLRVNSANSSQSNMLILQESCTDSTGSYVIYAPVDTVAMNVVLSGCDPDYVALLPSGFAILPDGPNAGPSAGGILELGSGGSLITVAFQILVDSVPTARLSIGSVATVNSLIKCTVERIRAAVMRENP 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18089436 18095804 - MC01g1342 Mch1g1771 676663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1771 724 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 44 719 IPR042160 -
Mch1g1771 724 ProSiteProfiles START domain profile. 233 466 IPR002913 GO:0008289(InterPro)
Mch1g1771 724 SMART START_1 242 463 IPR002913 GO:0008289(InterPro)
Mch1g1771 724 FunFam Homeobox-leucine zipper protein HDG1 39 124 - -
Mch1g1771 724 Pfam Homeodomain 51 106 IPR001356 GO:0003677(InterPro)
Mch1g1771 724 SUPERFAMILY Homeodomain-like 41 108 IPR009057 -
Mch1g1771 724 Pfam START domain 243 463 IPR002913 GO:0008289(InterPro)
Mch1g1771 724 FunFam Homeobox-leucine zipper protein GLABRA 2 242 462 - -
Mch1g1771 724 Coils Coil 102 134 - -
Mch1g1771 724 SUPERFAMILY Bet v1-like 235 464 - -
Mch1g1771 724 CDD homeodomain 50 109 IPR001356 GO:0003677(InterPro)
Mch1g1771 724 SMART HOX_1 49 112 IPR001356 GO:0003677(InterPro)
Mch1g1771 724 ProSitePatterns 'Homeobox' domain signature. 83 106 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Mch1g1771 724 Gene3D - 37 124 - -
Mch1g1771 724 ProSiteProfiles 'Homeobox' domain profile. 48 108 IPR001356 GO:0003677(InterPro)
Mch1g1771 724 SUPERFAMILY Bet v1-like 485 716 - -
Mch1g1771 724 CDD START_ArGLABRA2_like 237 462 - -
Mch1g1771 724 Gene3D - 295 463 IPR023393 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1771 Mch-Chr1:18089436 Mch2g0634 Mch-Chr2:4332703 0 dispersed
Mch1g1771 Mch-Chr1:18089436 Mch11g1166 Mch-Chr11:8194781 2.03E-125 wgd
Mch1g1771 Mch-Chr1:18089436 Mch3g1219 Mch-Chr3:15350213 0 wgd
Mch1g1771 Mch-Chr1:18089436 Mch4g0233 Mch-Chr4:1496817 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42789 PF01852 START 1.20E-47 CL0209 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1771 K09338 - csv:101209093 1222.61