Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1774 ATGGCGACCAATCAGCCGCTCCTCCAACCCCCCAAAACTCACCGCTCCAAAGCCTTCTCCATAATCCTCTGTTTCGCTACCATTTTATGCTCAGCTTTCTTCATCGCCAACCACTTGATCGGACCAAACCCATCTGAAATTGATCAGCTCTTCCTCCATAACATCTGCCGTAAGGCTTATAACCCAGCATCATGCGTTGCAATGGCCGCCTCCGAAGTTCCCTTCCATCGAGAAGCGAAAATGACCAACGGCGTTCATTTCTTACAGGTTTTCTTGAGGAAATCCCTGACAAAAGTTACGGACACGATCGAGAGAGCGAATGATCTCATTCTCAGCCGTAGGATCAACGACGCGCGTGGGGAAGCAGCGCTGGCGGACTGCCTGGAGCTCATGGAGATCTCCATGGACCGAATAACGGACTCCATTTTGGCTCTGGCTCTGAACAACAAAACGAGTGTGCCCATCGAAGATGCCCACGCGTGGCTCAGTAGCGTGCTCACGAACCACGTCACGTGCTCCGATGAGTTGGAGAAGTCACTGCTCGGAACCACGGCGGCGGAGCTAGGGCTGGAGGAGTTGATTATGACGGCGAGAAACTCTCTGGCCATGTTGGTTTCGATTTCGCAACCGGAACCGGAACCCGAAATTGAGGGACAAATTGGGTTTCCGGGATGGCTGAAGAGTGGGGATCGGATGCTTTTGGGGGTCACGGGCCAGCAAATCAAAGCCAATATAGTGGTGGCCAAGGATGGGAGTGGGAATTTCAAGACGGTGAAGGAGGCGGTTGCGTCGGTTCCAGATAAAAGTAAGAACAGATTTGTGATATACGTGAAGAAGGGAACTTACGAGGAGAATGTAGAAGTCGAAAAGAAGAAGAAGAATGTGATGATCGTTGGAGATGGAATGGATTCCACCATCATCACTGGCAGTCTCAATGTTGTTGACGGATCTACAACTTTTAAATCTGCAACTGTAGCTGCCGTGGGAGATGGATTTATAGCCCAAGATATCTGGTTCAGGAACACCGCCGGGCCTGAAAAGCACCAAGCGGTGGCACTTCGCGTCGGAGCCGACCAATCCGTCATTAACCGGTGCCGTATCGACGCTTACCAAGACACTCTATACACACATTCCAACCGCCAATTCTACAGAGACTCCACAATCACCGGCACCGTCGACTTCATATTCGGGAACGCCGCCGTCGTACTACAGAACTGCAAAATAGAAGCCCGTCGGCCCATGAGCAACCAGGCCAACATGGTTACGGCCCAAGGCCGAATCGATCCGAATCAGAACACTGGAACTTCCATCCACAGATGCCAAATCGTGGCAAGCTCTGACCTCGAGCCCGTTAAACGGTCCATTAAGACATATTTGGGCCGCCCATGGAAGGAGTATTCGAGGACCGTCATCATGCAGTCCAGAATTGGCGATCTTATAGATCCGACGGGCTGGGCCGAGTGGAATGGGGACTTTGCACTGAAGACGCTATATTACGGTGAGTATTTGAATAATGGGCCGGGCTCTGATGTTAGCAAGCGAGTCAAATGGCCCGGTTACCGTGTCATTACCAACCCGGCTGAGGCCCAAAAGTTCACGGTGGATTCACTAATACAAGGAGGTGATTGGCTGGGCCCTACAGGCGTGACTTTCATCCCAGGGCTGTGA 1668 51.92 MATNQPLLQPPKTHRSKAFSIILCFATILCSAFFIANHLIGPNPSEIDQLFLHNICRKAYNPASCVAMAASEVPFHREAKMTNGVHFLQVFLRKSLTKVTDTIERANDLILSRRINDARGEAALADCLELMEISMDRITDSILALALNNKTSVPIEDAHAWLSSVLTNHVTCSDELEKSLLGTTAAELGLEELIMTARNSLAMLVSISQPEPEPEIEGQIGFPGWLKSGDRMLLGVTGQQIKANIVVAKDGSGNFKTVKEAVASVPDKSKNRFVIYVKKGTYEENVEVEKKKKNVMIVGDGMDSTIITGSLNVVDGSTTFKSATVAAVGDGFIAQDIWFRNTAGPEKHQAVALRVGADQSVINRCRIDAYQDTLYTHSNRQFYRDSTITGTVDFIFGNAAVVLQNCKIEARRPMSNQANMVTAQGRIDPNQNTGTSIHRCQIVASSDLEPVKRSIKTYLGRPWKEYSRTVIMQSRIGDLIDPTGWAEWNGDFALKTLYYGEYLNNGPGSDVSKRVKWPGYRVITNPAEAQKFTVDSLIQGGDWLGPTGVTFIPGL 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18113086 18115434 - MC01g1344 Mch1g1774 676666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1774 555 NCBIfam pectinesterase inhibitor domain 19 179 IPR006501 GO:0004857(InterPro)
Mch1g1774 555 Gene3D Invertase/pectin methylesterase inhibitor family protein 49 208 IPR035513 -
Mch1g1774 555 Pfam Pectinesterase 244 540 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Mch1g1774 555 FunFam Pectinesterase 238 555 - -
Mch1g1774 555 CDD PMEI-like_4 61 208 - -
Mch1g1774 555 Gene3D - 238 555 IPR012334 -
Mch1g1774 555 PANTHER PECTINESTERASE 22 545 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Mch1g1774 555 SMART PMEI_2 47 203 IPR006501 GO:0004857(InterPro)
Mch1g1774 555 Pfam Plant invertase/pectin methylesterase inhibitor 51 203 IPR006501 GO:0004857(InterPro)
Mch1g1774 555 ProSitePatterns Pectinesterase signature 2. 388 397 IPR033131 -
Mch1g1774 555 SUPERFAMILY Pectin lyase-like 239 554 IPR011050 -
Mch1g1774 555 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 51 179 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1774 Mch-Chr1:18113086 Mch9g0697 Mch-Chr9:5247033 7.50E-153 dispersed
Mch1g1774 Mch-Chr1:18113086 Mch6g1850 Mch-Chr6:21011905 2.29E-153 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1774 K01051 - csv:101216377 838.18