Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1788 ATGGATAAGTTCCGACTTTCCTTCTGCTTCTTCAATCTTCTCTCCTTTCACCGAAGGAAAATGAAAATGGTGATGGGCAGTTGGAGTAATTTCACAACCCTTTTCTTCCTCATCTCCTTCATTCTCGCACAGTTGATTTTTACCACAACTTCTCAACCGGAATTTTTCTTCTGGAAATGTTCAGACAACGGCAACTACACCAACAACAGCCCTTTCAAGAGAAATCTGGACAACGCACTCGCCTCCGTCTCCTCCAAATCCAACACCAACCCCCAGGGAACTGACTACGGCTTCTATAATGCCTCCTCCGGCGAAGATCCCGACAGAGCCAACGTTAAGGTGCTCTGCCGTGGAGGTGCTCCCTTGGAACAATGCAGAATTTGTGTGAATAACTCAGTCCGCAGGATTTTGCAAAATTGCCCTGCCCAGAAGGAAGGTACTGGATGGTACCACGATTGCCAGATTCTTTACTCAAACAACTCTATCAATGGTGAGATATCCATTGCAGGGGCGGGTCAAACTTATTACAACGTCAATACAGCCCCAGACGCGAAGGGTTTCAACGAGGCACGGAGGGAGTTGCTGGATGGGCTGCGAGAGAAGGCTGCCAGAGGGAGTTCTATTCGCAAGTCCGCTGGCGGCGATGTGAAGCTTCAAGCTCCGAATACGTATACCATATATGGGCTTGTTGATTGTTTTCCCGATATGCCGTTCTTCGATTGTGATGTGTGCCTCAGTCGCCTTCAGAGTTCTCTTCCTAGTTGTTGTAACGGCAGCATAGGGGCCAGATTAGTGGTGACTAGTTGCCAAATCAATTATGAGATCCACCCTCTGTATGAGTTACTCCTCTCTCCGCCTCCGCCTCCGCCCTCAGCTGCTGAACTCCCACCGCCATCTGCGCCTCCAACCGGAGGAAACGATGGCAATACGGTTAGAACTGTTATAATCGTTGTGGCGTCCGTCGTTTCTGCTATCATTCTCGTTGTTGCCATTTTCATCATTTTGAGATTCAGGAAGCGTAACCACAGAACACCGTTACAAACATTTGAAGGTGCTTCTCTTGTTGACAACACTGATGAAATTAGCAGTGCAGAGACGATTCAATATGATTTTGACACTATTAAAGTTGCAACAAATGATTTCTCAACTGAAAACAAGCTTGGACAGGGTGGATTTGGAGCTGTTTACAGGGGTGAGCTACATAATGGACAGCAGATAGCAGTGAAGAGGCTTGCAAATAATTCACAGCAAGGAGATATTGAATTCAAAAATGAAGTCCTTTTGGTCGCCAAACTTCAACACCGAAACTTGGTCAGGCTGTTGGGATTCTGCTTGCAAGGAAGCGAAAGACTTCTCATATATGAGTTTGTACCAAATGGCAGCCTTGACCACTTCATATTTGATTTTGGAAAGCGGACACTATTAGATTGGGAAAGACGGTACAAAATTATAGTTGGGATTGCACGAGGACTTCTTTACCTTCACGAAGATTCTCGCCTTCGAATTATACATCGTGATCTCAAAGCTAGTAATATTTTGTTAGATGGAGAAATGAATTCAAAAATTGCAGATTTTGGTATGGCAAGATTGTTCGAAGTAGATGAGACTCAAGGAAATACTAGTAGAATTGTGGGAACTTATGGTTATATGGCTCCGGAGTATGCGATGCATGGACAATTTTCAATAAAATCAGATGTCTTTAGCTTTGGTATTTTGGTTCTTGAAATTTTGAGCGGCCAAAAAAATAATTGTTTTCGCAACGGGGAAAAAGTGGAAGATCTCTCCAGCTTTGCATGGAAAAATTGGAAGGCAGGAACAACTATAAATGTCATAGATTCTGCACTTAGTGCCGGTTCAAGAATTGAAATGATAAGATGTGTTCATATTGGACTACTATGTGTTCAAGAGAATGCAGCAGATCGACCAACAATGACTTCAGTGGTACTAATGCTTAGTAGCTTCTCTCTCAGTCTCCCAGTACCTTTTGAACCTGCATTCTTTATGGACAGTACATTGACAAAGTCAAATCCATGGTTGGAAATGACTCAAGCTAGTAACTCTGGAAGTACTCCCCTCCAACGTTCTGAAAATGAAACTTCAATTACTGAACTCCACCCTCGATAG 2124 43.83 MDKFRLSFCFFNLLSFHRRKMKMVMGSWSNFTTLFFLISFILAQLIFTTTSQPEFFFWKCSDNGNYTNNSPFKRNLDNALASVSSKSNTNPQGTDYGFYNASSGEDPDRANVKVLCRGGAPLEQCRICVNNSVRRILQNCPAQKEGTGWYHDCQILYSNNSINGEISIAGAGQTYYNVNTAPDAKGFNEARRELLDGLREKAARGSSIRKSAGGDVKLQAPNTYTIYGLVDCFPDMPFFDCDVCLSRLQSSLPSCCNGSIGARLVVTSCQINYEIHPLYELLLSPPPPPPSAAELPPPSAPPTGGNDGNTVRTVIIVVASVVSAIILVVAIFIILRFRKRNHRTPLQTFEGASLVDNTDEISSAETIQYDFDTIKVATNDFSTENKLGQGGFGAVYRGELHNGQQIAVKRLANNSQQGDIEFKNEVLLVAKLQHRNLVRLLGFCLQGSERLLIYEFVPNGSLDHFIFDFGKRTLLDWERRYKIIVGIARGLLYLHEDSRLRIIHRDLKASNILLDGEMNSKIADFGMARLFEVDETQGNTSRIVGTYGYMAPEYAMHGQFSIKSDVFSFGILVLEILSGQKNNCFRNGEKVEDLSSFAWKNWKAGTTINVIDSALSAGSRIEMIRCVHIGLLCVQENAADRPTMTSVVLMLSSFSLSLPVPFEPAFFMDSTLTKSNPWLEMTQASNSGSTPLQRSENETSITELHPR 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18182049 18185386 + MC01g_new0437 Mch1g1788 676680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1788 707 FunFam Cysteine-rich receptor-like protein kinase 28 457 659 - -
Mch1g1788 707 CDD STKc_IRAK 387 648 - -
Mch1g1788 707 SUPERFAMILY Protein kinase-like (PK-like) 369 684 IPR011009 -
Mch1g1788 707 ProSitePatterns Serine/Threonine protein kinases active-site signature. 502 514 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g1788 707 Gene3D - 53 161 IPR038408 -
Mch1g1788 707 Gene3D - 171 277 IPR038408 -
Mch1g1788 707 MobiDBLite consensus disorder prediction 681 699 - -
Mch1g1788 707 FunFam Cysteine-rich receptor-like protein kinase 10 345 456 - -
Mch1g1788 707 ProSiteProfiles Gnk2-homologous domain profile. 54 162 IPR002902 -
Mch1g1788 707 Pfam Protein tyrosine and serine/threonine kinase 383 648 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g1788 707 Pfam Salt stress response/antifungal 181 274 IPR002902 -
Mch1g1788 707 Pfam Salt stress response/antifungal 59 159 IPR002902 -
Mch1g1788 707 Gene3D Phosphorylase Kinase; domain 1 348 456 - -
Mch1g1788 707 ProSiteProfiles Gnk2-homologous domain profile. 169 278 IPR002902 -
Mch1g1788 707 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 152 667 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Mch1g1788 707 ProSitePatterns Protein kinases ATP-binding region signature. 387 409 IPR017441 GO:0005524(InterPro)
Mch1g1788 707 MobiDBLite consensus disorder prediction 681 707 - -
Mch1g1788 707 SMART serkin_6 381 632 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g1788 707 ProSiteProfiles Protein kinase domain profile. 381 655 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g1788 707 Gene3D Transferase(Phosphotransferase) domain 1 457 657 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1785 Mch-Chr1:18168510 Mch1g1788 Mch-Chr1:18182049 8.07E-223 dispersed
Mch1g1786 Mch-Chr1:18173341 Mch1g1788 Mch-Chr1:18182049 4.12E-278 dispersed
Mch1g1788 Mch-Chr1:18182049 Mch9g0055 Mch-Chr9:443241 8.14E-289 dispersed
Mch1g1787 Mch-Chr1:18179149 Mch1g1788 Mch-Chr1:18182049 1.16E-98 tandem
Mch1g1788 Mch-Chr1:18182049 Mch1g1789 Mch-Chr1:18187054 1.80E-176 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77152 PF07714 PK_Tyr_Ser-Thr 7.00E-49 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1788 - - - 0.0