Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1792 ATGCACGGCCTCGTCCTCTGTCGAGGAGATGTGCCCAGCGATAACTGTCACAGTTGTGTCAGTGCTGCAAGAAAAGACATAAGAGATCGATGTCCTTCAAGAGTAAACGCCACAATATGGTACGATGAGTGTATGCTGAGATACTCAGACAAGAACTTCTTGGGGACTGTGGAGATATCGCCGAGGTTTCTCATGGGCGATTCCGGGAACCAGACATCACCGGATGATCGGAATATGGATGGACCTGCCCTGTTGTCTCAATTGGCGAGGGAAGCCGCAGGGTCAGAGATGATGTTTAAGGCAAACAAGTTGGATGAACGCGGGACACGCTATGGATTGGTTCAGTGCACAAGGGATCTCAACAGTAGCGAGTGTGGTACATGTTTGACGGCTCTGTTGGAGGAGATCAGGCAGTGTAACTTCAAAGAGAGGGTGGGGTGGAGAATTTTGGGCCCAAGTTGTAACATAAGGTATGAGCAATATCCTTTCTATCAGCAACAAGCGTCGCAGTCTCAAGGATTGAACACGAAAATGATCATAGTCATTACTATATCAACAGTTGCAGCAGTAGCAGTTATATCCGGTCTATTGTATTGTTTACTTTCATCCAAGAAGAGAAGACAGGAGATGGATACAGGTGAACAAGTTCTGTTGAGAAATTTGGGAGATGCGAAGTCTGCACAATTGATGAAGCAAGATTTGCATTCAAGAGACGGAAACAATGATGAGGAAATGCATTACTTCAGTTTCATTACCCTACAGGCTGCCACAAACAACTTTGCAGATGAAAACCTACTTGGAGAAGGCGGCTTCGGTCCAGTTTACAAGGGAAAGTTGATCAACGGGACAGAAATAGCCGTAAAAAGACTGTCGTTAAAGTCGAGTCAAGGTCACGACGAGTTCAAGAATGAAGTCATGGTCATAATGAAGCTTCAACATAAAAATCTGGTCAGGCTTTTGGGTTGCTGTCTGGAGGGAGAGGAAGAGCTTCTTGTCTACGAGTACATGGCTAACACTAGTCTAGATGCCTTCTTATTTGATCCAGTTAAATGCAAAGAACTCGATTGGGTTAAGCGCAACAACATCATCAACGGAGTCGCAAGAGGAATCCTATATCTACACGAAGACTCTAGACTTAAAATAATTCATCGGGATTTGAAAGCTAGCAATGTGTTGTTGGATGATGAGATGAATGCAAAGATATCCGACTTTGGAACCGCCAGAATTTTCGGAGGCAAGCAAGTTGAGGCAAGCACCAACAGAGTTGTTGGTACTTTTGGATATATGGCACCAGAATATGCAATGGAGGGAGTGTTTTCTATAAAGTCCGATGTCTACAGCTTTGGGATTTTAATGTTAGAAGTAATAAGCGGGAGAAAGAATAGCGGTTTCTTCAAAGTCGACAATGCAAAAAATCTTCTATCGCAGGCATGGCAACTATGGAAGGAAGGCAGAGAAGAGGAGATGGTTGATCCGAACCTGGTTGGAGATTGTTCTTTAAGCGAAGCTCTGAGATGGATCCAAATTGCGCTGCTCTGTGTACAAGAAGACCCCAACACCAGACCCACCATGTCAATGGTTGCTCTAATGCTTGGAAGCAAATCGATTCGCTTTCCTCAACCGTCAAAACCTCCATTCTTTCCGATTGGGTTCCCGATGTCCGCCGATCAATCGTCAATGACTTTACCGGGGACGGAATATTATCTCTCCACTCAATCGTCTACCACTGCTTCTATATAG 1740 44.71 MHGLVLCRGDVPSDNCHSCVSAARKDIRDRCPSRVNATIWYDECMLRYSDKNFLGTVEISPRFLMGDSGNQTSPDDRNMDGPALLSQLAREAAGSEMMFKANKLDERGTRYGLVQCTRDLNSSECGTCLTALLEEIRQCNFKERVGWRILGPSCNIRYEQYPFYQQQASQSQGLNTKMIIVITISTVAAVAVISGLLYCLLSSKKRRQEMDTGEQVLLRNLGDAKSAQLMKQDLHSRDGNNDEEMHYFSFITLQAATNNFADENLLGEGGFGPVYKGKLINGTEIAVKRLSLKSSQGHDEFKNEVMVIMKLQHKNLVRLLGCCLEGEEELLVYEYMANTSLDAFLFDPVKCKELDWVKRNNIINGVARGILYLHEDSRLKIIHRDLKASNVLLDDEMNAKISDFGTARIFGGKQVEASTNRVVGTFGYMAPEYAMEGVFSIKSDVYSFGILMLEVISGRKNSGFFKVDNAKNLLSQAWQLWKEGREEEMVDPNLVGDCSLSEALRWIQIALLCVQEDPNTRPTMSMVALMLGSKSIRFPQPSKPPFFPIGFPMSADQSSMTLPGTEYYLSTQSSTTASI 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18195671 18199299 - MC01g_new0441 Mch1g1792 676684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1792 579 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 224 335 - -
Mch1g1792 579 ProSiteProfiles Protein kinase domain profile. 260 547 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g1792 579 Gene3D Phosphorylase Kinase; domain 1 234 335 - -
Mch1g1792 579 ProSiteProfiles Gnk2-homologous domain profile. 59 163 IPR002902 -
Mch1g1792 579 FunFam Uncharacterized protein 336 537 - -
Mch1g1792 579 ProSitePatterns Serine/Threonine protein kinases active-site signature. 381 393 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g1792 579 Gene3D - 64 163 IPR038408 -
Mch1g1792 579 Gene3D - 1 53 IPR038408 -
Mch1g1792 579 Gene3D Transferase(Phosphotransferase) domain 1 336 538 - -
Mch1g1792 579 ProSiteProfiles Gnk2-homologous domain profile. 1 53 IPR002902 -
Mch1g1792 579 Pfam Salt stress response/antifungal 83 161 IPR002902 -
Mch1g1792 579 Pfam Salt stress response/antifungal 2 50 IPR002902 -
Mch1g1792 579 Pfam Protein tyrosine and serine/threonine kinase 264 528 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g1792 579 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 102 547 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Mch1g1792 579 CDD STKc_IRAK 266 531 - -
Mch1g1792 579 SUPERFAMILY Protein kinase-like (PK-like) 242 562 IPR011009 -
Mch1g1792 579 SMART serkin_6 260 531 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1792 Mch-Chr1:18195671 Mch3g1208 Mch-Chr3:15262262 4.58E-144 dispersed
Mch1g1792 Mch-Chr1:18195671 Mch1g1793 Mch-Chr1:18200454 3.10E-249 tandem
Mch9g2261 Mch-Chr9:22937256 Mch1g1792 Mch-Chr1:18195671 1.30E-94 transposed
Mch1g1792 Mch-Chr1:18195671 Mch3g1206 Mch-Chr3:15244505 8.68E-28 wgd
Mch1g1792 Mch-Chr1:18195671 Mch4g0219 Mch-Chr4:1420937 1.25E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77154 PF07714 PK_Tyr_Ser-Thr 7.50E-48 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1792 - - - 0.0