Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1793 ATGTCTTCGTTTCTGTATATAACATCTCTCTACTTTATCATCCGGGTGTTAATTCTTTTGAGAGCTACCCCAAAAACTAAGGAAACTATGCTTCATTTCCTCCCTCAAACACCTTCTTCTTTGCCTTTGCCTTTCCCTTTACTGCTGCTGCTGTTGGTTTCAATCTCTGGATTCATAATCCCTTCTTGTGCCCAACGTTACTTAAACTGCTCAGGACCCAACACGGCACCCCTGCATCCCAATCTGAATTCTGATGTCAATTCCCTATTGAGTTCCTTGTCCTCTAAAGCTGCCTCCCACAGTTTCTACAATGAGTCCTTTAATGGAATCCACGGCCTCTTCCTCTGCCGAGGCGATGTTCCTAACGAAGTCTGTCGTACCTGCGTCGAGAGCGCAAGCCAACAAATGAAAGTGGACTGCTCTTCTCGGACAAACGGTACCTTATGTTTTGATGAATGTATGGTGAGGTACTCGGTTGAAAACATCTTTGGGACTCTGGAGACTGTTCCAAGAATACTGTTGTATGATAGTAAGAACAAATCTACTCTTGAAGCCCGTAATTCCATTGATCTTTCTCTGGTGTATAATTTAATAAGAGATGCCACAGAGGCAGATTTGATGTTCAAGGCAGGTCTGGTAAATGTGTCTGGTTCGGAAAATTTGAAATATGGATTGGCACAGTGTACAAGAGATATCACCAGGCGTGCATGTGATGTCTGTTTGAAAAATTTGGTGGATTTTGGAAAGGGATGTTGCCTACGCCAAAAAGGGTGGCGAGTTATAGCCCCAAACTGTAATTTAAGGGTCGAGGCCTACCGTTTCTATGACATACCAGGAGCTCTCCCTCCGTCTTTGCCTGCACCTGATGAAGATGGAGGGAACAGAGCAAGTATCATAGTTATCAGCATATCAACAGCTGCAGCAGTGGCAATTCTGCTTGGCCTATTGTACTGTTCTTTTTTATGGAGAAACAAAAGACCGGAGAGGGATATGAGTGAAGAGCTTCCTCTGCGAAATCTGGTTGATCGACAGCCAGTTAGCTTGACGAGGCAACATTTGGATGCAACAAATCAAGACAATGATGGAGATACAGATATTCATTACTTCAGTTTGAGTACTCTACAGATTGCTACGGATGACTTTTCGGATGCTAATAGACTTGGAGAAGGCGGGTTTGGTCCAGTTTACAAGGGAAAGCTGATGGGTGGTGAGGAAATAGCAGTGAAAAGACTATCAACAAAATCAAGTCAAGGACATGAAGAGTTCAAGAATGAAGCAAAGGTCATCTTGAAGCTTCAGCATAAGAATCTGGTCAGGCTCTTGGGATGCTGTGTTGAAGGAGAAGAAAAACTTCTGGTCTATGAGTACATGGCAAATACTAGTCTTGACGCCTTCTTGTTTGATCCATTGCAGTGCAAACAACTTGACTGGCTCAAGCGCAAAAACATCGTCAATGGGATTGCAAGAGGAATCCTCTACCTCCATGAAGATTCTCGACTCAAAATCATCCATCGGGACTTGAAAGCAAGCAATGTACTGTTAGATGAAGAGATGAATCCAAAAATATCAGACTTTGGAACTGCCAGGATATTTGGAGGCAACCAAATTGATGCCAGCACCAACAGAATAGTTGGCACGTATGGTTATATGGCGCCGGAGTATGCTATGGAGGGACTCTTCTCAGTCAAGTCTGATGTATACAGTTTTGGAGTTCTTATGCTAGAAGTGATCAGTGGGAGAAAGAACATTGGTTTTCTGAACATAGACAGAGCGCAGAACCTTCTGTCACATGCATGGGAGCTATGGGGCGAAGGCAGAGCAGAAGAAGTGGTAGACAAGAATTTGGCTGAAGATTGTCCTGTGGGTGAGGCTGTTAGATGGATCCACATTGGGTTGTTGTGTGTTCAAGAGGATCCTAACATCAGACCCACCATGTCAATGGTGGTTCTAATGCTTGGAAGCCAATCGATTCACCTTCCTCAGCCATCAAAACCTCCATTTCTTTCAGGTCGAGGGATTCTCATTGCAACACATCAATATTCAACCACTGAAACAGGGACAGGGGATGCTAATAGTCGATTCACCACAGATCAGTCCTCTACTACTGCTTCTGTCTAG 2118 44.0 MSSFLYITSLYFIIRVLILLRATPKTKETMLHFLPQTPSSLPLPFPLLLLLLVSISGFIIPSCAQRYLNCSGPNTAPLHPNLNSDVNSLLSSLSSKAASHSFYNESFNGIHGLFLCRGDVPNEVCRTCVESASQQMKVDCSSRTNGTLCFDECMVRYSVENIFGTLETVPRILLYDSKNKSTLEARNSIDLSLVYNLIRDATEADLMFKAGLVNVSGSENLKYGLAQCTRDITRRACDVCLKNLVDFGKGCCLRQKGWRVIAPNCNLRVEAYRFYDIPGALPPSLPAPDEDGGNRASIIVISISTAAAVAILLGLLYCSFLWRNKRPERDMSEELPLRNLVDRQPVSLTRQHLDATNQDNDGDTDIHYFSLSTLQIATDDFSDANRLGEGGFGPVYKGKLMGGEEIAVKRLSTKSSQGHEEFKNEAKVILKLQHKNLVRLLGCCVEGEEKLLVYEYMANTSLDAFLFDPLQCKQLDWLKRKNIVNGIARGILYLHEDSRLKIIHRDLKASNVLLDEEMNPKISDFGTARIFGGNQIDASTNRIVGTYGYMAPEYAMEGLFSVKSDVYSFGVLMLEVISGRKNIGFLNIDRAQNLLSHAWELWGEGRAEEVVDKNLAEDCPVGEAVRWIHIGLLCVQEDPNIRPTMSMVVLMLGSQSIHLPQPSKPPFLSGRGILIATHQYSTTETGTGDANSRFTTDQSSTTASV 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18200454 18203465 - MC01g_new0442 Mch1g1793 676685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1793 705 FunFam Uncharacterized protein 457 658 - -
Mch1g1793 705 Gene3D - 64 161 IPR038408 -
Mch1g1793 705 Gene3D - 174 274 IPR038408 -
Mch1g1793 705 Pfam Salt stress response/antifungal 80 158 IPR002902 -
Mch1g1793 705 Pfam Salt stress response/antifungal 208 271 IPR002902 -
Mch1g1793 705 Gene3D Transferase(Phosphotransferase) domain 1 457 659 - -
Mch1g1793 705 ProSiteProfiles Gnk2-homologous domain profile. 64 162 IPR002902 -
Mch1g1793 705 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 170 667 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Mch1g1793 705 ProSitePatterns Serine/Threonine protein kinases active-site signature. 502 514 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g1793 705 SMART serkin_6 381 628 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g1793 705 Pfam Protein tyrosine and serine/threonine kinase 385 649 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g1793 705 MobiDBLite consensus disorder prediction 682 705 - -
Mch1g1793 705 Gene3D Phosphorylase Kinase; domain 1 355 456 - -
Mch1g1793 705 ProSiteProfiles Gnk2-homologous domain profile. 168 274 IPR002902 -
Mch1g1793 705 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 346 456 - -
Mch1g1793 705 CDD STKc_IRAK 387 652 - -
Mch1g1793 705 SUPERFAMILY Protein kinase-like (PK-like) 363 669 IPR011009 -
Mch1g1793 705 ProSiteProfiles Protein kinase domain profile. 381 668 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1793 Mch-Chr1:18200454 Mch3g1208 Mch-Chr3:15262262 1.40E-137 dispersed
Mch1g1792 Mch-Chr1:18195671 Mch1g1793 Mch-Chr1:18200454 3.10E-249 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77155 PF07714 PK_Tyr_Ser-Thr 1.30E-47 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1793 - - - 0.0