Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1803 ATGGGAGAGGATTTTCAGGCGGGTATTTGCAGCGATAATTGGTGGAGCTCTTCGAGGGTGGCGATCGGGGGATTGTCCCCATGTTCGGTCGGGATCGCTGACTTTGGCTGGCCGCCGTCCGATGATCATTTTCCCGACATCAAACCCAAGCCGTCCGATAACTCCATGGCTTTCCAAGATCATTCCGCCGCCACTTTCCCCACCTCCGATTGGAACCAAACTGATGATCTCCTCAACTTCAATTACAGCCCAACCAACATGGATTATTGTGAGGTTAATTCTATAAAATACAGTTCATCGAGTAGTAGTTGCCAGGGTTTGTTTCCTGTTGACTCAACTACTTTATATGGATACCCTTCAAAGTTGCAGCTCCCAAGTTTATACGATGATCCTCAAAGTCATACCCTTTTCAACACTACTACTAGTGATTTATCTTTATCATCAACTCCTAATTTTCCTTCTAATTATGGCCTCAAACCCTCACTCCCCAAACAGCCTCAAGCTCAGCCTATTTCTTCTGGCTTGCACTTCACCAATAACACACCCTTTTGGAATGCTTCCGCCGCAGCCTCAACTGACAATATTCCGCAGGCCATTGTTTCTTCCGGCCAACTTCTGGCGTCTATACTTGAAGACAGAAACCCCAAATGCCAAAACAGTACTCTTGCTTTGAAGGTTATTAGTAGTGCTAATTGTGAAGATGGTCAAGAGGCAATTAAGAAAGGTGATCATAATAAAAATGGTACGGCCGAGCCACCAGTGTTCAAGAGGGCTCGAATTGAAACTCCTTCGCCATTGCCAACATTTAAGGTGCGGAAAGAGAAGCTAGGGGACCGAGTCACTGCCCTCCAACAACTGGTTTCACCGTTTGGAAAGACCGACACTGCCTCAGTTCTACATGAAGCCATTGAGTACATCAAGTTCCTCCACGATCAAGTCGGTGTATTAAGTACTCCATATATGAAGAACAACAATGGAACACCGGTCCAACACCAACAGGTTTGTGAAAAAGCGGAGGGAGATAGGGGAAAAGAAGATCTGAGAAGCCGAGGGCTTTGTTTGGTGCCGATTTCTAGCACATTCCCAGTTACTAACGCCACGACGCCGGACTTCTGGACGCCCACGTTCGGCGGAACTTTCCGGTGA 1146 47.03 MGEDFQAGICSDNWWSSSRVAIGGLSPCSVGIADFGWPPSDDHFPDIKPKPSDNSMAFQDHSAATFPTSDWNQTDDLLNFNYSPTNMDYCEVNSIKYSSSSSSCQGLFPVDSTTLYGYPSKLQLPSLYDDPQSHTLFNTTTSDLSLSSTPNFPSNYGLKPSLPKQPQAQPISSGLHFTNNTPFWNASAAASTDNIPQAIVSSGQLLASILEDRNPKCQNSTLALKVISSANCEDGQEAIKKGDHNKNGTAEPPVFKRARIETPSPLPTFKVRKEKLGDRVTALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVGVLSTPYMKNNNGTPVQHQQVCEKAEGDRGKEDLRSRGLCLVPISSTFPVTNATTPDFWTPTFGGTFR 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18243588 18246571 + MC01g1356 Mch1g1803 676695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1803 381 Gene3D - 270 327 IPR036638 GO:0046983(InterPro)
Mch1g1803 381 CDD bHLH_AtbHLH_like 266 317 IPR045239 -
Mch1g1803 381 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 270 323 IPR036638 GO:0046983(InterPro)
Mch1g1803 381 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 260 309 IPR011598 GO:0046983(InterPro)
Mch1g1803 381 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 106 360 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Mch1g1803 381 FunFam Transcription factor bHLH123 family 270 334 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1173 Mch-Chr10:9032970 Mch1g1803 Mch-Chr1:18243588 1.06E-63 dispersed
Mch1g1803 Mch-Chr1:18243588 Mch4g0758 Mch-Chr4:5173392 7.58E-31 dispersed
Mch1g1803 Mch-Chr1:18243588 Mch6g0827 Mch-Chr6:5721616 2.17E-33 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1803 - - - 0.0