Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1805 ATGGCGGTTCCGTGTCCGGATGATTTCAAATGCCCAATTTCTCTGGAGATAATGTCGGACCCGGTAATCCTCTCCTCCGGCCACACCTTCGATCGGGCCTCAATCCAACGCTGGCTCAACGCCGGTCACCGGACTTGCCCAATCACCCAGCTGCCGCTCCCCGAAAACCCTCCCCTAATCCCCAATCATGCTCTCAGAAGCTTAATTTCAAATTACAACCCTGTTTCGCTTTCAACGCCATTTCTCCCTCATCCGCCCCCCCAAACCCTAATCTCGGATCTAACCTCTCCCTCTTCGTCTCTCGATTCGAAGCTCCATTGCCTCAATCATCTCGCTCGGGTCTCCAAGCGCGATTCCGCTATGCGTAGAAGATTGACCGAGTCGGGAGCCGTCTCGGCGGTTCTTAAATGCGTTGGTTCGGACGAGCCCAGGCTCCAAGAGAAATCGCTCTCGCTGTTGCTGAATCTGAGTTTGGACGACGATAACAAAGTGGGTTTGGTGGCAGAAGGCGCTATTGGCCTCACCGTGGCTGCTCTTAAAGCGAGGTCCCCTGATTGCAGAGCCGTAGCAGCCACGATGCTGACAAGCCTGGCAGTGGTGGAGGTTAATAAGGCCACAATTGGGGCATATCCCTACGCGGTCTGCTCTCTAGTTTGTCTCCTACGGAACGGAAACAACAGAGAGCAGAAGGAAGCCGCGACAGCGCTATACGCCATTTGTTCGTTCCCTGGCAATCGTCTGCGCGCGGTGGAATGTGGGGCTGTGCCAATTTTGCTCAAAATTGCCAATTCCGGGCTCGACAGAGCAGTGGAGGTTCTGTGGCTTCTGGCCAAGTGTAAGGAAGGTCGAGAAGAGATGCAACGGTTCAGTGGATGTGTGGAGATTCTGGTGCGTGTGTTGAGAAATGGTTCCTCGAGGGGGGTTCAATACGCTCTTCTTACTCTGAGTTCCCTCTGCTGCCACTGCGAGCGAATGTGCGTGGAAGCTAGAAGGGAAGGCGTTTTGGGAATCTGTATGACATTGATTGATGACGATCACGAAAAGATCAGAGCAAATGCTGGAAATTTGATTCATATACTGCGCGGAAACAGCACATGA 1098 53.28 MAVPCPDDFKCPISLEIMSDPVILSSGHTFDRASIQRWLNAGHRTCPITQLPLPENPPLIPNHALRSLISNYNPVSLSTPFLPHPPPQTLISDLTSPSSSLDSKLHCLNHLARVSKRDSAMRRRLTESGAVSAVLKCVGSDEPRLQEKSLSLLLNLSLDDDNKVGLVAEGAIGLTVAALKARSPDCRAVAATMLTSLAVVEVNKATIGAYPYAVCSLVCLLRNGNNREQKEAATALYAICSFPGNRLRAVECGAVPILLKIANSGLDRAVEVLWLLAKCKEGREEMQRFSGCVEILVRVLRNGSSRGVQYALLTLSSLCCHCERMCVEARREGVLGICMTLIDDDHEKIRANAGNLIHILRGNST 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18254212 18256371 - MC01g_new0449 Mch1g1805 676697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1805 365 FunFam RING-type E3 ubiquitin transferase 4 76 - -
Mch1g1805 365 Pfam U-box domain 6 72 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch1g1805 365 SUPERFAMILY RING/U-box 3 72 - -
Mch1g1805 365 SUPERFAMILY ARM repeat 88 360 IPR016024 -
Mch1g1805 365 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch1g1805 365 SMART arm_5 118 158 IPR000225 GO:0005515(InterPro)
Mch1g1805 365 SMART arm_5 279 320 IPR000225 GO:0005515(InterPro)
Mch1g1805 365 SMART arm_5 159 199 IPR000225 GO:0005515(InterPro)
Mch1g1805 365 Gene3D - 269 364 IPR011989 -
Mch1g1805 365 Gene3D - 86 268 IPR011989 -
Mch1g1805 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 76 IPR013083 -
Mch1g1805 365 SMART Ubox_2 8 72 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch1g1805 365 PANTHER U BOX DOMAIN-CONTAINING 6 360 - -
Mch1g1805 365 CDD RING-Ubox_PUB 6 53 IPR045210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1805 Mch-Chr1:18254212 Mch3g1054 Mch-Chr3:14120268 3.20E-37 dispersed
Mch1g1805 Mch-Chr1:18254212 Mch3g1460 Mch-Chr3:16894727 7.28E-35 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1805 K27970 - csv:101213883 625.935