Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1806 ATGTCTGCCTGCAATTTTAGTGGGGTTAAGCCAAACACTTCAATGAAATTTCTCCAGTGGTGCCCCCCACCTAAAAGCCTAAGAATTGGTAATATCATACCTGTCCATTTTCTCACAAGTCAGAGAATATCGGCAAATAACGCCGCCATTGAAGTTTCTTCATTCAAATTCAGACAAGATCAGGATATGGGTGGCAATTGCAGAAAGGTTGTTGGGTTTTTACAGTTCTTACTCATTTCTTTCTTTTTCGGCTCTACTCTGTTTTGTGACGCCGCAGATTCAATCTCCAATGGCAGAGAATTAAGAGACAGTACTAATGAAACCCTTATATCCCCTAACGAGTTCTTCGAACTGGGATTCTTCAGCCCCCAAAATAAGTCCTCATTACGGTACGTGGGAATATGGTATTACAAGATCGAGGAACAGGCTGTTATTTGGGTCGCAAACAGAAAAGAGCCACTTCGAAACAGGGATGGGGTTTTGAAAATCGGAGACGACGGAAATTTGGTTGTTCTGGACGGCAACAACGTGGTTTGGACAAGCAATATTACAGTGAATACGTCTGATCCCTCAAACTTAACTCTCCACAACAACGGAGAATTGGTTCTGTCGCGCGGAGACGCCGTCCTCTGGAAAAGCTTCGATCACCCGACGGATACATTTCTTCCGAACATGTTGGTGGAGGTGAGCTCAGAAATAGGGGAGAAACGATTGTTCATGTCGTGGAAATCGGAGACCGACCCAGCTGTGGGAAATTACTGTCTGGGGGTGGATCCTCGTGGAGCCGTACAGATTATAATTTGGAATGGAACTGGGAATAATCGACTGTGGAGAAGCGGCCACTGGGATAAACAGATATTTTCTGGGGTTCCGACTATGCGTTCGGCTTCGTCGTACGGTTTCACTGTGAACGAAGAGAGCCGAGGACGCGGACTCGTGAGTTTAAAATTTCGTCCATCGAATGATTCCGATAGGATGAAATTTCAGATACGGTGGGATGGAAAAGAAGCACAGCAACGTTGGAACGAAGGGAGTCGCAAATGGGAAACGATGCGTTTACTGCCTTCTAACGATTGCGACTTCTATAATTTCTGTGGGGATTTTGGGGTTTGCTCTGAATCGAGTCGTCCCAAGTGCACTTGCCCTCGAGGGTTTGAACCCAAAGACAACGATCGATGGAGCAGAGGGATTTGGTCAGATGGGTGCCGGCGGAAGACTCCATTACTTGAGCAAAGGAAGAATAGCAGTGATTTTAATGGAACTGCGGGAGATGGGGAGGAAGATGGGTTTTTTGACGTAGAGTTTGTGAAATTGCCTGATTTCATATCTCAAGTATTTGTGGACTCGTGTAAAGACAGATGCTCGAACAATTCTTCGTGTATTGCTTATTCGGATGCTCCTGGAATTGGGTGCGTTACGTGGGATGGACCTTTGGTTGATATTCAGAAATTTGATGGAGCTGGGCATACTTTGCACATTCGTCTCGCTCATTCTGATTTGGTATCTGTAGACAGCGGGAGCAGATTGTCGGTTGGTGTGATAGTATCGATATGTTTGGGAGGAGCAGCTGCCATAGCCGTATTAGCGTTGCTGCTATGGAAGTTCAGAGGAAAATCGAAAGATCTTTCTGGGCCATACGAATTAGGCCTAGAAGGTGAACAATTGAGTGGACCAGATTTGCCAATGTTCAATTTCAACTGTGTAGCTACTGCTACAGATAACTTTTCTGAGGAAAACAAGCTCGGCCAGGGAGGTTTTGGGCCGGTATACAAGGGAAAGCTTCCAAGTGGACAGGAAATCGCTGTGAAGAGGCTCTCGGTCCGGTCTGGCCAAGGTCTAGAAGAGTTCAAAAATGAGATTATACTTATAGGAAAATTGCAGCATCGAAACCTTGTCAGACTTTTGGGCTACTGCATACAAGGGGAGGACAAGATGTTGCTCTATGAATATATGCCAAACAAAAGCTTGGATTGGTTTCTTTTCGATCCGATTAAGCAGGCTCTACTAGATTGGAGAGTACGGTTGTCAATCATCGAGGGAATTGCACGAGGGCTTCTATACCTTCATCGAGACTCAAGGCTTCTTATTATTCATCGAGATCTAAAAGCTAGCAACATTTTGTTGGATGAAGACATGAATCCAAAGATATCAGACTTTGGCATGGCTAGAATATTTGGTGGAAACCAAAACGAGGCGACAAATACCATTCGTGTTGTTGGCACATACGGTTACATGGCTCCAGAATATGCAATGGAAGGTCTATTTTCGGTGAAATCAGATGTCTATAGTTTTGGCGTATTATTGTTAGAAATAATCTGTGGCCGGAGAAACACTAGCTTTCGCTCAACGGAATACTTAACCCTTATTGGCTAT 2373 44.75 MSACNFSGVKPNTSMKFLQWCPPPKSLRIGNIIPVHFLTSQRISANNAAIEVSSFKFRQDQDMGGNCRKVVGFLQFLLISFFFGSTLFCDAADSISNGRELRDSTNETLISPNEFFELGFFSPQNKSSLRYVGIWYYKIEEQAVIWVANRKEPLRNRDGVLKIGDDGNLVVLDGNNVVWTSNITVNTSDPSNLTLHNNGELVLSRGDAVLWKSFDHPTDTFLPNMLVEVSSEIGEKRLFMSWKSETDPAVGNYCLGVDPRGAVQIIIWNGTGNNRLWRSGHWDKQIFSGVPTMRSASSYGFTVNEESRGRGLVSLKFRPSNDSDRMKFQIRWDGKEAQQRWNEGSRKWETMRLLPSNDCDFYNFCGDFGVCSESSRPKCTCPRGFEPKDNDRWSRGIWSDGCRRKTPLLEQRKNSSDFNGTAGDGEEDGFFDVEFVKLPDFISQVFVDSCKDRCSNNSSCIAYSDAPGIGCVTWDGPLVDIQKFDGAGHTLHIRLAHSDLVSVDSGSRLSVGVIVSICLGGAAAIAVLALLLWKFRGKSKDLSGPYELGLEGEQLSGPDLPMFNFNCVATATDNFSEENKLGQGGFGPVYKGKLPSGQEIAVKRLSVRSGQGLEEFKNEIILIGKLQHRNLVRLLGYCIQGEDKMLLYEYMPNKSLDWFLFDPIKQALLDWRVRLSIIEGIARGLLYLHRDSRLLIIHRDLKASNILLDEDMNPKISDFGMARIFGGNQNEATNTIRVVGTYGYMAPEYAMEGLFSVKSDVYSFGVLLLEIICGRRNTSFRSTEYLTLIGY 791
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18260398 18263772 - MC01g1357 Mch1g1806 676698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1806 791 SUPERFAMILY Protein kinase-like (PK-like) 558 781 IPR011009 -
Mch1g1806 791 Gene3D - 87 214 IPR036426 -
Mch1g1806 791 ProSiteProfiles EGF-like domain profile. 355 391 IPR000742 -
Mch1g1806 791 SUPERFAMILY alpha-D-mannose-specific plant lectins 144 248 IPR036426 -
Mch1g1806 791 Pfam D-mannose binding lectin 144 243 IPR001480 -
Mch1g1806 791 ProSiteProfiles Bulb-type lectin domain profile. 94 216 IPR001480 -
Mch1g1806 791 CDD B_lectin 104 217 IPR001480 -
Mch1g1806 791 Pfam PAN-like domain 426 481 IPR003609 -
Mch1g1806 791 ProSiteProfiles Protein kinase domain profile. 575 791 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g1806 791 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 87 214 - -
Mch1g1806 791 Pfam Protein tyrosine and serine/threonine kinase 578 774 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g1806 791 SMART serkin_6 575 786 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g1806 791 PIRSF SRK 67 791 IPR024171 GO:0004674(InterPro)
Mch1g1806 791 CDD PAN_AP_plant 423 496 - -
Mch1g1806 791 Gene3D Phosphorylase Kinase; domain 1 550 650 - -
Mch1g1806 791 Gene3D Transferase(Phosphotransferase) domain 1 651 789 - -
Mch1g1806 791 Pfam S-locus glycoprotein domain 277 388 IPR000858 GO:0048544(InterPro)
Mch1g1806 791 ProSitePatterns Serine/Threonine protein kinases active-site signature. 696 708 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g1806 791 FunFam Lectin-domain containing receptor kinase A4.3 651 789 - -
Mch1g1806 791 SMART blect_4 100 217 IPR001480 -
Mch1g1806 791 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 546 650 - -
Mch1g1806 791 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 92 782 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1806 Mch-Chr1:18260398 Mch3g1187 Mch-Chr3:15081308 5.88E-208 dispersed
Mch1g1806 Mch-Chr1:18260398 Mch11g1127 Mch-Chr11:7892222 2.77E-177 wgd
Mch1g1806 Mch-Chr1:18260398 Mch2g0602 Mch-Chr2:4134040 1.35E-92 wgd
Mch1g1806 Mch-Chr1:18260398 Mch3g1179 Mch-Chr3:15018230 1.40E-204 wgd
Mch1g1806 Mch-Chr1:18260398 Mch4g0198 Mch-Chr4:1323098 1.25E-137 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77158 PF07714 PK_Tyr_Ser-Thr 9.10E-44 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1806 - - - 0.0