Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1840 ATGGGTCGTGCAAATTGGAATTTGTTCGTGAAGATCCTCGTTGGGCTGCTCATGGTCTCTTTGAAGCCTTTTTGCTTTGGAGACACTGACCTCCGCGATGTTGCTGCAATCAATGCATTATTCATTTCTCTTGGCTACCCTCCTCTGCGAGGGTGGATTCTTGTTGGAGGTGATCCATGTGGGGAGAAGTGGCAAGGGGTTGAATGTGTATTCTCAAATATAACAGCGATACAGCTCAGTGGTTTGAATTTGGGAGGAGAGCTAGGCAGTAGCTTGGGCCAATTTGAGTCGATAATATCAATAGATCTAAGCAACAACCATATTGGAGGCAATATTCCATCTATGTTGCCCCCTACACTAAGAAGTTTTTCTTTATCAGCTAATCAATTCACTGGAAGCATTCCCCCTGGACTGGCCTCACTGACACAATTGATGGACTTGTCGTTAAACAATAACCTTCTTACCGGGGTGATACCCGATGTCTTCCAGCAGCTTAATGGCTTGAATAACTTGGACTTGTCTGGCAACAACTTGAGCGGCCCATTGCCTCCCTCGATGGCTGATTTGTTCTCCCTTACTACATTGCATTTGCAGAACAATCAACTTTCTGGGATGCTCAATGCTCTACAGGATCTTCCACTGTCGGATTTGAATATAGAGGACAATCTTTTTTCTGGACCTATACCTCCAAAGTTGTTGGGCGTACCAAATTTCAGAAAGGATGGAAACCCGTTTAATACTACGATAATTCCATCCGCGCCTGCTTTAGCCCCTTCACCATTTGCTCTCGCACCGGTTACTGTGGGACAACCAACAAGTCAGACGGGCTCAGGTCAGCCATTTTCTTCAGGAACTCCTGAATCAGATGGAGCAAGTGGTTTTTTCTCTACTAGGCGGATCATGTGGATTGCTATTATTGGCACTGTAATAGTTGTAGCATTAGGATCCTGTCTTCTCGTGCCAATATGCTTGAAAAGAAGAAGCAAGCATCGAGAAGACACGAACAGCGCTGATATGGCATCTAAATATAAGCCAAAACCCACGAAGCCGCCCTCGGTTGCAATTGATGACATGGAGAAAGGTCAAAGGGAGACCATTCTTAAGCCACTTGATGGAGACAGAGTGAAGGATAGAATAATGGATTTTACCCCAAGGCTGCATGATAGACAGGAGGCAAATGGGAAAAGAAAAGATGCTTCTAATCATACGAGTTTTCGTAGAGACGATACTGATATTTCAGGCATAAGCGATGACTTCCTAGCACCGCCTCCTCCTCCCCCATTTCCGCTCCTTTCAATGCAGGAGGTCACGAAACCAATTGTGGCAGCTGAAGTATCTAGTAGAGTACCTAAAAAACCAAACTCTAGTTCTTTGAAAGTCTTCACAATCGCGTCACTTCAGCAGTACACAAATAGTTTCTCTGAAGATAATCTTCTTGGAAGAGGCATGCTTGGCAGTGTCTATAGAGCTGAACTTCCAAGTGGAAGGCTTCTGGCTGTTAAAAAACTGGATGGTGCCTCTTCAATGCACCGGAGCGATGATGAATTTCACGACCTTGTATCTAATATATGCAAAATTCGGCACGATAACATTGTCGAGCTTGTGGGCTACTGTGCTGAGCATGGACAATATCTACTCGTATACGAGTATTGCGTAAATGGCACACTCTATGACGCACTACACGTGGACAAGGACATGCATCAAAAGCTTTCATGGAACATGCGCGTAAGGATTGCACTCGGAGCCGCGAGAGCCCTTGAGTATCTACATGAGGCCTGTCAGCCACCCATCATGCACCAAAATTTTAAGTCTGCTAATATTCTACTGGACAATGAGCTAAAAGCGCGGGTCTCTGACACTGGCTTGGCTCCACTGCTTTCAAGTTCAGCAACTCAGTCATCCGGGCGTTTCCTCCCACCTCATGGTTACAGTGCTCCTGAATTCGAGTCGGGAACTTACACTTACCAAAGTGACGTTTTTAGCTTTGGAGTCATAATGCTAGAGCTTCTCACTGGGCGGAAGTCGTGTGACCGATCATTGCCTCGGGGAGAGCAATTTCTAGTTAGATGGGCTGTTCCGAGGCTCCACGATATCGATGCGTTATCAAGAATGGTCGATCCCTCGCTTAATGACATGTATCCCATAAAGTCGTTATCGCGCTTCGCTGATATTATATCCTCTTGTATAATGCGAGAGGCCGAATTTCGGCCGCCAATCTCAGAAATTGTACAGGAACTCTTACAAATGCTCTAG 2253 45.63 MGRANWNLFVKILVGLLMVSLKPFCFGDTDLRDVAAINALFISLGYPPLRGWILVGGDPCGEKWQGVECVFSNITAIQLSGLNLGGELGSSLGQFESIISIDLSNNHIGGNIPSMLPPTLRSFSLSANQFTGSIPPGLASLTQLMDLSLNNNLLTGVIPDVFQQLNGLNNLDLSGNNLSGPLPPSMADLFSLTTLHLQNNQLSGMLNALQDLPLSDLNIEDNLFSGPIPPKLLGVPNFRKDGNPFNTTIIPSAPALAPSPFALAPVTVGQPTSQTGSGQPFSSGTPESDGASGFFSTRRIMWIAIIGTVIVVALGSCLLVPICLKRRSKHREDTNSADMASKYKPKPTKPPSVAIDDMEKGQRETILKPLDGDRVKDRIMDFTPRLHDRQEANGKRKDASNHTSFRRDDTDISGISDDFLAPPPPPPFPLLSMQEVTKPIVAAEVSSRVPKKPNSSSLKVFTIASLQQYTNSFSEDNLLGRGMLGSVYRAELPSGRLLAVKKLDGASSMHRSDDEFHDLVSNICKIRHDNIVELVGYCAEHGQYLLVYEYCVNGTLYDALHVDKDMHQKLSWNMRVRIALGAARALEYLHEACQPPIMHQNFKSANILLDNELKARVSDTGLAPLLSSSATQSSGRFLPPHGYSAPEFESGTYTYQSDVFSFGVIMLELLTGRKSCDRSLPRGEQFLVRWAVPRLHDIDALSRMVDPSLNDMYPIKSLSRFADIISSCIMREAEFRPPISEIVQELLQML 750
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18462526 18467627 - MC01g1387 Mch1g1840 676732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1840 750 MobiDBLite consensus disorder prediction 267 290 - -
Mch1g1840 750 MobiDBLite consensus disorder prediction 329 355 - -
Mch1g1840 750 SMART LRR_typ_2 141 164 IPR003591 -
Mch1g1840 750 SMART LRR_typ_2 189 211 IPR003591 -
Mch1g1840 750 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 30 256 - -
Mch1g1840 750 ProSiteProfiles Protein kinase domain profile. 473 750 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g1840 750 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 551 750 - -
Mch1g1840 750 Pfam Leucine Rich Repeat 98 116 IPR001611 GO:0005515(InterPro)
Mch1g1840 750 Pfam Protein tyrosine and serine/threonine kinase 477 746 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g1840 750 Gene3D Phosphorylase Kinase; domain 1 438 550 - -
Mch1g1840 750 MobiDBLite consensus disorder prediction 386 414 - -
Mch1g1840 750 Gene3D Ribonuclease Inhibitor 39 253 IPR032675 -
Mch1g1840 750 SUPERFAMILY L domain-like 35 237 - -
Mch1g1840 750 SUPERFAMILY Protein kinase-like (PK-like) 450 746 IPR011009 -
Mch1g1840 750 Gene3D Transferase(Phosphotransferase) domain 1 552 749 - -
Mch1g1840 750 Pfam Leucine rich repeat 118 178 IPR001611 GO:0005515(InterPro)
Mch1g1840 750 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 441 550 - -
Mch1g1840 750 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 33 746 IPR046959 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1840 Mch-Chr1:18462526 Mch8g1013 Mch-Chr8:7183135 1.21E-125 dispersed
Mch1g0797 Mch-Chr1:11594280 Mch1g1840 Mch-Chr1:18462526 9.70E-53 transposed
Mch1g1840 Mch-Chr1:18462526 Mch4g0174 Mch-Chr4:1164393 1.01E-186 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77159 PF07714 PK_Tyr_Ser-Thr 9.90E-39 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1840 - - - 0.0