Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch1g1840 | ATGGGTCGTGCAAATTGGAATTTGTTCGTGAAGATCCTCGTTGGGCTGCTCATGGTCTCTTTGAAGCCTTTTTGCTTTGGAGACACTGACCTCCGCGATGTTGCTGCAATCAATGCATTATTCATTTCTCTTGGCTACCCTCCTCTGCGAGGGTGGATTCTTGTTGGAGGTGATCCATGTGGGGAGAAGTGGCAAGGGGTTGAATGTGTATTCTCAAATATAACAGCGATACAGCTCAGTGGTTTGAATTTGGGAGGAGAGCTAGGCAGTAGCTTGGGCCAATTTGAGTCGATAATATCAATAGATCTAAGCAACAACCATATTGGAGGCAATATTCCATCTATGTTGCCCCCTACACTAAGAAGTTTTTCTTTATCAGCTAATCAATTCACTGGAAGCATTCCCCCTGGACTGGCCTCACTGACACAATTGATGGACTTGTCGTTAAACAATAACCTTCTTACCGGGGTGATACCCGATGTCTTCCAGCAGCTTAATGGCTTGAATAACTTGGACTTGTCTGGCAACAACTTGAGCGGCCCATTGCCTCCCTCGATGGCTGATTTGTTCTCCCTTACTACATTGCATTTGCAGAACAATCAACTTTCTGGGATGCTCAATGCTCTACAGGATCTTCCACTGTCGGATTTGAATATAGAGGACAATCTTTTTTCTGGACCTATACCTCCAAAGTTGTTGGGCGTACCAAATTTCAGAAAGGATGGAAACCCGTTTAATACTACGATAATTCCATCCGCGCCTGCTTTAGCCCCTTCACCATTTGCTCTCGCACCGGTTACTGTGGGACAACCAACAAGTCAGACGGGCTCAGGTCAGCCATTTTCTTCAGGAACTCCTGAATCAGATGGAGCAAGTGGTTTTTTCTCTACTAGGCGGATCATGTGGATTGCTATTATTGGCACTGTAATAGTTGTAGCATTAGGATCCTGTCTTCTCGTGCCAATATGCTTGAAAAGAAGAAGCAAGCATCGAGAAGACACGAACAGCGCTGATATGGCATCTAAATATAAGCCAAAACCCACGAAGCCGCCCTCGGTTGCAATTGATGACATGGAGAAAGGTCAAAGGGAGACCATTCTTAAGCCACTTGATGGAGACAGAGTGAAGGATAGAATAATGGATTTTACCCCAAGGCTGCATGATAGACAGGAGGCAAATGGGAAAAGAAAAGATGCTTCTAATCATACGAGTTTTCGTAGAGACGATACTGATATTTCAGGCATAAGCGATGACTTCCTAGCACCGCCTCCTCCTCCCCCATTTCCGCTCCTTTCAATGCAGGAGGTCACGAAACCAATTGTGGCAGCTGAAGTATCTAGTAGAGTACCTAAAAAACCAAACTCTAGTTCTTTGAAAGTCTTCACAATCGCGTCACTTCAGCAGTACACAAATAGTTTCTCTGAAGATAATCTTCTTGGAAGAGGCATGCTTGGCAGTGTCTATAGAGCTGAACTTCCAAGTGGAAGGCTTCTGGCTGTTAAAAAACTGGATGGTGCCTCTTCAATGCACCGGAGCGATGATGAATTTCACGACCTTGTATCTAATATATGCAAAATTCGGCACGATAACATTGTCGAGCTTGTGGGCTACTGTGCTGAGCATGGACAATATCTACTCGTATACGAGTATTGCGTAAATGGCACACTCTATGACGCACTACACGTGGACAAGGACATGCATCAAAAGCTTTCATGGAACATGCGCGTAAGGATTGCACTCGGAGCCGCGAGAGCCCTTGAGTATCTACATGAGGCCTGTCAGCCACCCATCATGCACCAAAATTTTAAGTCTGCTAATATTCTACTGGACAATGAGCTAAAAGCGCGGGTCTCTGACACTGGCTTGGCTCCACTGCTTTCAAGTTCAGCAACTCAGTCATCCGGGCGTTTCCTCCCACCTCATGGTTACAGTGCTCCTGAATTCGAGTCGGGAACTTACACTTACCAAAGTGACGTTTTTAGCTTTGGAGTCATAATGCTAGAGCTTCTCACTGGGCGGAAGTCGTGTGACCGATCATTGCCTCGGGGAGAGCAATTTCTAGTTAGATGGGCTGTTCCGAGGCTCCACGATATCGATGCGTTATCAAGAATGGTCGATCCCTCGCTTAATGACATGTATCCCATAAAGTCGTTATCGCGCTTCGCTGATATTATATCCTCTTGTATAATGCGAGAGGCCGAATTTCGGCCGCCAATCTCAGAAATTGTACAGGAACTCTTACAAATGCTCTAG | 2253 | 45.63 | MGRANWNLFVKILVGLLMVSLKPFCFGDTDLRDVAAINALFISLGYPPLRGWILVGGDPCGEKWQGVECVFSNITAIQLSGLNLGGELGSSLGQFESIISIDLSNNHIGGNIPSMLPPTLRSFSLSANQFTGSIPPGLASLTQLMDLSLNNNLLTGVIPDVFQQLNGLNNLDLSGNNLSGPLPPSMADLFSLTTLHLQNNQLSGMLNALQDLPLSDLNIEDNLFSGPIPPKLLGVPNFRKDGNPFNTTIIPSAPALAPSPFALAPVTVGQPTSQTGSGQPFSSGTPESDGASGFFSTRRIMWIAIIGTVIVVALGSCLLVPICLKRRSKHREDTNSADMASKYKPKPTKPPSVAIDDMEKGQRETILKPLDGDRVKDRIMDFTPRLHDRQEANGKRKDASNHTSFRRDDTDISGISDDFLAPPPPPPFPLLSMQEVTKPIVAAEVSSRVPKKPNSSSLKVFTIASLQQYTNSFSEDNLLGRGMLGSVYRAELPSGRLLAVKKLDGASSMHRSDDEFHDLVSNICKIRHDNIVELVGYCAEHGQYLLVYEYCVNGTLYDALHVDKDMHQKLSWNMRVRIALGAARALEYLHEACQPPIMHQNFKSANILLDNELKARVSDTGLAPLLSSSATQSSGRFLPPHGYSAPEFESGTYTYQSDVFSFGVIMLELLTGRKSCDRSLPRGEQFLVRWAVPRLHDIDALSRMVDPSLNDMYPIKSLSRFADIISSCIMREAEFRPPISEIVQELLQML | 750 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 18462526 | 18467627 | - | MC01g1387 | Mch1g1840 | 676732 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch1g1840 | 750 | MobiDBLite | consensus disorder prediction | 267 | 290 | - | - | |
Mch1g1840 | 750 | MobiDBLite | consensus disorder prediction | 329 | 355 | - | - | |
Mch1g1840 | 750 | SMART | LRR_typ_2 | 141 | 164 | IPR003591 | - | |
Mch1g1840 | 750 | SMART | LRR_typ_2 | 189 | 211 | IPR003591 | - | |
Mch1g1840 | 750 | FunFam | protein STRUBBELIG-RECEPTOR FAMILY 3 | 30 | 256 | - | - | |
Mch1g1840 | 750 | ProSiteProfiles | Protein kinase domain profile. | 473 | 750 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch1g1840 | 750 | FunFam | protein STRUBBELIG-RECEPTOR FAMILY 8 | 551 | 750 | - | - | |
Mch1g1840 | 750 | Pfam | Leucine Rich Repeat | 98 | 116 | IPR001611 | GO:0005515(InterPro) | |
Mch1g1840 | 750 | Pfam | Protein tyrosine and serine/threonine kinase | 477 | 746 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Mch1g1840 | 750 | Gene3D | Phosphorylase Kinase; domain 1 | 438 | 550 | - | - | |
Mch1g1840 | 750 | MobiDBLite | consensus disorder prediction | 386 | 414 | - | - | |
Mch1g1840 | 750 | Gene3D | Ribonuclease Inhibitor | 39 | 253 | IPR032675 | - | |
Mch1g1840 | 750 | SUPERFAMILY | L domain-like | 35 | 237 | - | - | |
Mch1g1840 | 750 | SUPERFAMILY | Protein kinase-like (PK-like) | 450 | 746 | IPR011009 | - | |
Mch1g1840 | 750 | Gene3D | Transferase(Phosphotransferase) domain 1 | 552 | 749 | - | - | |
Mch1g1840 | 750 | Pfam | Leucine rich repeat | 118 | 178 | IPR001611 | GO:0005515(InterPro) | |
Mch1g1840 | 750 | FunFam | Protein STRUBBELIG-RECEPTOR FAMILY 8 | 441 | 550 | - | - | |
Mch1g1840 | 750 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 | 33 | 746 | IPR046959 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch1g1840 | Mch-Chr1:18462526 | Mch8g1013 | Mch-Chr8:7183135 | 1.21E-125 | dispersed | |
Mch1g0797 | Mch-Chr1:11594280 | Mch1g1840 | Mch-Chr1:18462526 | 9.70E-53 | transposed | |
Mch1g1840 | Mch-Chr1:18462526 | Mch4g0174 | Mch-Chr4:1164393 | 1.01E-186 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
77159 | PF07714 | PK_Tyr_Ser-Thr | 9.90E-39 | CL0016 | Mch | PK |
Pathway information
