Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1840 ATGGGTCGTGCAAATTGGAATTTGTTCGTGAAGATCCTCGTTGGGCTGCTCATGGTCTCTTTGAAGCCTTTTTGCTTTGGAGACACTGACCTCCGCGATGTTGCTGCAATCAATGCATTATTCATTTCTCTTGGCTACCCTCCTCTGCGAGGGTGGATTCTTGTTGGAGGTGATCCATGTGGGGAGAAGTGGCAAGGGGTTGAATGTGTATTCTCAAATATAACAGCGATACAGCTCAGTGGTTTGAATTTGGGAGGAGAGCTAGGCAGTAGCTTGGGCCAATTTGAGTCGATAATATCAATAGATCTAAGCAACAACCATATTGGAGGCAATATTCCATCTATGTTGCCCCCTACACTAAGAAGTTTTTCTTTATCAGCTAATCAATTCACTGGAAGCATTCCCCCTGGACTGGCCTCACTGACACAATTGATGGACTTGTCGTTAAACAATAACCTTCTTACCGGGGTGATACCCGATGTCTTCCAGCAGCTTAATGGCTTGAATAACTTGGACTTGTCTGGCAACAACTTGAGCGGCCCATTGCCTCCCTCGATGGCTGATTTGTTCTCCCTTACTACATTGCATTTGCAGAACAATCAACTTTCTGGGATGCTCAATGCTCTACAGGATCTTCCACTGTCGGATTTGAATATAGAGGACAATCTTTTTTCTGGACCTATACCTCCAAAGTTGTTGGGCGTACCAAATTTCAGAAAGGATGGAAACCCGTTTAATACTACGATAATTCCATCCGCGCCTGCTTTAGCCCCTTCACCATTTGCTCTCGCACCGGTTACTGTGGGACAACCAACAAGTCAGACGGGCTCAGGTCAGCCATTTTCTTCAGGAACTCCTGAATCAGATGGAGCAAGTGGTTTTTTCTCTACTAGGCGGATCATGTGGATTGCTATTATTGGCACTGTAATAGTTGTAGCATTAGGATCCTGTCTTCTCGTGCCAATATGCTTGAAAAGAAGAAGCAAGCATCGAGAAGACACGAACAGCGCTGATATGGCATCTAAATATAAGCCAAAACCCACGAAGCCGCCCTCGGTTGCAATTGATGACATGGAGAAAGGTCAAAGGGAGACCATTCTTAAGCCACTTGATGGAGACAGAGTGAAGGATAGAATAATGGATTTTACCCCAAGGCTGCATGATAGACAGGAGGCAAATGGGAAAAGAAAAGATGCTTCTAATCATACGAGTTTTCGTAGAGACGATACTGATATTTCAGGCATAAGCGATGACTTCCTAGCACCGCCTCCTCCTCCCCCATTTCCGCTCCTTTCAATGCAGGAGGTCACGAAACCAATTGTGGCAGCTGAAGTATCTAGTAGAGTACCTAAAAAACCAAACTCTAGTTCTTTGAAAGTCTTCACAATCGCGTCACTTCAGCAGTACACAAATAGTTTCTCTGAAGATAATCTTCTTGGAAGAGGCATGCTTGGCAGTGTCTATAGAGCTGAACTTCCAAGTGGAAGGCTTCTGGCTGTTAAAAAACTGGATGGTGCCTCTTCAATGCACCGGAGCGATGATGAATTTCACGACCTTGTATCTAATATATGCAAAATTCGGCACGATAACATTGTCGAGCTTGTGGGCTACTGTGCTGAGCATGGACAATATCTACTCGTATACGAGTATTGCGTAAATGGCACACTCTATGACGCACTACACGTGGACAAGGACATGCATCAAAAGCTTTCATGGAACATGCGCGTAAGGATTGCACTCGGAGCCGCGAGAGCCCTTGAGTATCTACATGAGGCCTGTCAGCCACCCATCATGCACCAAAATTTTAAGTCTGCTAATATTCTACTGGACAATGAGCTAAAAGCGCGGGTCTCTGACACTGGCTTGGCTCCACTGCTTTCAAGTTCAGCAACTCAGTCATCCGGGCGTTTCCTCCCACCTCATGGTTACAGTGCTCCTGAATTCGAGTCGGGAACTTACACTTACCAAAGTGACGTTTTTAGCTTTGGAGTCATAATGCTAGAGCTTCTCACTGGGCGGAAGTCGTGTGACCGATCATTGCCTCGGGGAGAGCAATTTCTAGTTAGATGGGCTGTTCCGAGGCTCCACGATATCGATGCGTTATCAAGAATGGTCGATCCCTCGCTTAATGACATGTATCCCATAAAGTCGTTATCGCGCTTCGCTGATATTATATCCTCTTGTATAATGCGAGAGGCCGAATTTCGGCCGCCAATCTCAGAAATTGTACAGGAACTCTTACAAATGCTCTAG 2253 45.63 MGRANWNLFVKILVGLLMVSLKPFCFGDTDLRDVAAINALFISLGYPPLRGWILVGGDPCGEKWQGVECVFSNITAIQLSGLNLGGELGSSLGQFESIISIDLSNNHIGGNIPSMLPPTLRSFSLSANQFTGSIPPGLASLTQLMDLSLNNNLLTGVIPDVFQQLNGLNNLDLSGNNLSGPLPPSMADLFSLTTLHLQNNQLSGMLNALQDLPLSDLNIEDNLFSGPIPPKLLGVPNFRKDGNPFNTTIIPSAPALAPSPFALAPVTVGQPTSQTGSGQPFSSGTPESDGASGFFSTRRIMWIAIIGTVIVVALGSCLLVPICLKRRSKHREDTNSADMASKYKPKPTKPPSVAIDDMEKGQRETILKPLDGDRVKDRIMDFTPRLHDRQEANGKRKDASNHTSFRRDDTDISGISDDFLAPPPPPPFPLLSMQEVTKPIVAAEVSSRVPKKPNSSSLKVFTIASLQQYTNSFSEDNLLGRGMLGSVYRAELPSGRLLAVKKLDGASSMHRSDDEFHDLVSNICKIRHDNIVELVGYCAEHGQYLLVYEYCVNGTLYDALHVDKDMHQKLSWNMRVRIALGAARALEYLHEACQPPIMHQNFKSANILLDNELKARVSDTGLAPLLSSSATQSSGRFLPPHGYSAPEFESGTYTYQSDVFSFGVIMLELLTGRKSCDRSLPRGEQFLVRWAVPRLHDIDALSRMVDPSLNDMYPIKSLSRFADIISSCIMREAEFRPPISEIVQELLQML 750
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18462526 18467627 - MC01g1387 Mch1g1840 676732

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1840 750 MobiDBLite consensus disorder prediction 267 290 - -
Mch1g1840 750 MobiDBLite consensus disorder prediction 329 355 - -
Mch1g1840 750 SMART LRR_typ_2 141 164 IPR003591 -
Mch1g1840 750 SMART LRR_typ_2 189 211 IPR003591 -
Mch1g1840 750 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 30 256 - -
Mch1g1840 750 ProSiteProfiles Protein kinase domain profile. 473 750 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g1840 750 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 551 750 - -
Mch1g1840 750 Pfam Leucine Rich Repeat 98 116 IPR001611 GO:0005515(InterPro)
Mch1g1840 750 Pfam Protein tyrosine and serine/threonine kinase 477 746 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g1840 750 Gene3D Phosphorylase Kinase; domain 1 438 550 - -
Mch1g1840 750 MobiDBLite consensus disorder prediction 386 414 - -
Mch1g1840 750 Gene3D Ribonuclease Inhibitor 39 253 IPR032675 -
Mch1g1840 750 SUPERFAMILY L domain-like 35 237 - -
Mch1g1840 750 SUPERFAMILY Protein kinase-like (PK-like) 450 746 IPR011009 -
Mch1g1840 750 Gene3D Transferase(Phosphotransferase) domain 1 552 749 - -
Mch1g1840 750 Pfam Leucine rich repeat 118 178 IPR001611 GO:0005515(InterPro)
Mch1g1840 750 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 441 550 - -
Mch1g1840 750 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 33 746 IPR046959 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1840 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1840 Mch-Chr1:18462526 Mch8g1013 Mch-Chr8:7183135 1.21E-125 dispersed
Mch1g0797 Mch-Chr1:11594280 Mch1g1840 Mch-Chr1:18462526 9.70E-53 transposed
Mch1g1840 Mch-Chr1:18462526 Mch4g0174 Mch-Chr4:1164393 1.01E-186 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch4g0174 . 34 786 Strubbelig Receptor Gene Family AT4G03390 62.9 1.8e-209 726.1
Mch1g1840 . 29 750 Strubbelig Receptor Gene Family AT4G03390 53.6 2.3e-159 559.7
Mch5g1424 . 9 726 Strubbelig Receptor Gene Family AT5G06820 51.1 1.7e-172 603.2
Mch4g1111 . 23 689 Strubbelig Receptor Gene Family AT1G78980 58.4 5.9e-183 637.9
Mch9g0166 . 28 690 Strubbelig Receptor Gene Family AT1G78980 52.9 1.8e-131 466.8
Mch4g1111 . 2 666 Strubbelig Receptor Gene Family AT3G13065 52.6 8.0e-140 494.6
Mch9g0166 . 7 685 Strubbelig Receptor Gene Family AT3G13065 51.1 5.0e-110 395.6
Mch3g0804 . 361 654 Strubbelig Receptor Gene Family AT1G11130 53.1 5.6e-85 312.4
Mch9g0166 . 397 685 Strubbelig Receptor Gene Family AT1G11130 52.9 1.4e-83 307.8
Mch5g1424 . 9 726 Strubbelig Receptor Gene Family AT5G06820 51.1 1.7e-172 603.2
Mch4g0174 . 34 786 Strubbelig Receptor Gene Family AT4G03390 62.9 1.8e-209 726.1
Mch1g1840 . 29 750 Strubbelig Receptor Gene Family AT4G03390 53.6 2.3e-159 559.7
Mch4g1111 . 2 666 Strubbelig Receptor Gene Family AT3G13065 52.6 8.0e-140 494.6
Mch9g0166 . 7 685 Strubbelig Receptor Gene Family AT3G13065 51.1 5.0e-110 395.6
Mch4g1111 . 23 689 Strubbelig Receptor Gene Family AT1G78980 58.4 5.9e-183 637.9
Mch9g0166 . 28 690 Strubbelig Receptor Gene Family AT1G78980 52.9 1.8e-131 466.8
Mch8g1013 . 1 736 Strubbelig Receptor Gene Family AT1G53730 59.6 2.2e-209 725.7
Mch9g0166 . 1 696 Strubbelig Receptor Gene Family AT1G53730 64.4 1.6e-199 693.0
Mch3g0804 . 5 677 Strubbelig Receptor Gene Family AT1G53730 53.9 3.4e-149 525.8
Mch8g1013 . 11 734 Strubbelig Receptor Gene Family AT3G14350 51.5 3.4e-183 638.6
Mch9g0166 . 11 702 Strubbelig Receptor Gene Family AT3G14350 54.8 1.1e-173 607.1
Mch3g0804 . 208 685 Strubbelig Receptor Gene Family AT4G22130 69.7 3.3e-176 615.1
Mch8g1013 . 429 752 Strubbelig Receptor Gene Family AT4G22130 64.4 1.7e-119 426.8
Mch9g0166 . 391 704 Strubbelig Receptor Gene Family AT4G22130 64.9 1.3e-116 417.2
Mch4g0174 . 483 778 Strubbelig Receptor Gene Family AT4G22130 61.6 1.2e-106 384.0
Mch1g1840 . 461 750 Strubbelig Receptor Gene Family AT4G22130 60.1 7.3e-99 358.2
Mch4g1111 . 379 688 Strubbelig Receptor Gene Family AT4G22130 55.8 7.3e-99 358.2
Mch5g1424 . 375 695 Strubbelig Receptor Gene Family AT4G22130 51.7 9.6e-91 331.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007627 1 3 1 0 1 0 2 0 0 1 1 0 1 1 1 1 0 2 1 0 1 1 1 1 1 1 1 0 1 0 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77159 PF07714 PK_Tyr_Ser-Thr 9.90E-39 CL0016 Mch PK