Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1876 AATAACCACGAATATGATCTCCCCCCATTCCCATTCCCCAATCTTTACTCCGCCGCCGCTCCCACCGGCGGCATTTTCCTCTCTCCTCAAAACTCCTCCGCCCATCTCCCCATTTGCCAGCCACTGTTCGGATTCTCCTCCATAGCCACCCCGCAGTCGTACCTTTTGGGTACTCATGAACAACAACAACTGCCCACCGCCGCCAGCTCCCAGCTGTTTCCACCACCCTACGCTTTCAACCCCACTAATAATTCTGTGTTGCTCTCCAAAGATAATGAGGCTGCTGGAAGAAGGGTTCTGGATGCGTGGAGCACCAAGGTCGCCAGAAGTAAGAGAAGACTCGCCCGCCAAAGAACCCTTATTTTGAATAGAGCCTCTTCTTCTTCTTCTTTCTCTGGTTTTGGTTATGGTACTGAAGAATATTCTTCGTCCAAGGGAGTAACCGTAACCACCAACACCCTCTCATCCACCAACTCTGATTCTCCCAACAATAGAACCCACAATCTCTTCACCTTCTGCACTCCAGATAAGAAGATATTGAGGTTGAGAATGCTGCTGAAGAAAGAGCTGAAGAACAGTGATGTTGGGTCTTTGGGCAGGATCGTTCTCCCCAAGAGGGAGGCCGAAGAGAATCTTCCATTGCTAACTGATAAGGAAGGGATCCAAGTTACGATAAGAGATGTGAACTCGCACAGAAAATGGGCCATGAAATACAAGTACTGGGCAAACAACAGAAGTAGAATGTATGTGCTGGAAAACACAGGGGATTTCGTTAGACAAAATGGATTGGTAATCGGAGATGCAATGACCCTTTACGAGGATGAATGCAAGAACCTCTACGTGACAATACAAAAAGGTGAGAAGCATTCAAGCATGGAAGAGAAGCAGAGAATTGTGCATGGAGAAGAGTCAGCCAAAATTTACACAAACAATAACATTACCATTAAAGACGAAGAAGAGGAAGCATCTTTAGCTCTATTGATTGAAGAGCTCAAACCGCCGCCCAATCTCACACTCTCACACAGCTCCGATTCCGGCTGCACGACAGCCAGCTTCGAAAGAGGCTGCTACATCACCCGCCGCCAGTCCACGGCGGCGCGTGGGAAAGGGAAGGAGGAGGATTTAGACCACTACCAAAGTATAAATAATAATTATAATAATAGTAATGGGTTTGAGGATTGCTTTGGAGGGCTGGATCCGCTGCCGGAAGTCGGTCGATTCAACTGCTCTCTTTTCGACTACTTAAGCAACGACAGAACG 1260 47.7 NNHEYDLPPFPFPNLYSAAAPTGGIFLSPQNSSAHLPICQPLFGFSSIATPQSYLLGTHEQQQLPTAASSQLFPPPYAFNPTNNSVLLSKDNEAAGRRVLDAWSTKVARSKRRLARQRTLILNRASSSSSFSGFGYGTEEYSSSKGVTVTTNTLSSTNSDSPNNRTHNLFTFCTPDKKILRLRMLLKKELKNSDVGSLGRIVLPKREAEENLPLLTDKEGIQVTIRDVNSHRKWAMKYKYWANNRSRMYVLENTGDFVRQNGLVIGDAMTLYEDECKNLYVTIQKGEKHSSMEEKQRIVHGEESAKIYTNNNITIKDEEEEASLALLIEELKPPPNLTLSHSSDSGCTTASFERGCYITRRQSTAARGKGKEEDLDHYQSINNNYNNSNGFEDCFGGLDPLPEVGRFNCSLFDYLSNDRT 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18779234 18782447 - MC01g1419 Mch1g1876 676768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1876 420 Gene3D - 177 296 IPR015300 -
Mch1g1876 420 ProSiteProfiles B3 DNA-binding domain profile. 186 287 IPR003340 GO:0003677(InterPro)
Mch1g1876 420 Pfam B3 DNA binding domain 188 285 IPR003340 GO:0003677(InterPro)
Mch1g1876 420 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 125 309 IPR044800 GO:0003700(InterPro)
Mch1g1876 420 CDD B3_DNA 185 283 IPR003340 GO:0003677(InterPro)
Mch1g1876 420 SUPERFAMILY DNA-binding pseudobarrel domain 185 283 IPR015300 -
Mch1g1876 420 SMART B3_2 186 287 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1876 Mch-Chr1:18779234 Mch9g0063 Mch-Chr9:496327 3.91E-30 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42798 PF02362 B3 2.50E-16 CL0405 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1876 K09287 - csv:105436043 333.183