Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1893 ATGGAAGCTGCTGCTTCGGACGGGGAGAATCACAACCAGAATAATGATAATATTAACAAAATTAGTAACTCAAGTGAGGGTCTTAGCAAGCCCAAGCGCCAGATGAAGACTCCGTTTCAGCTTGAAACCCTCGAGAAAGCCTATGCTTTGGAGACGTACCCATCAGAGTCGACGAGGGCTGAACTGTCGGAGAAATTGGGGCTCACCGATCGGCAATTGCAGATGTGGTTTTGTCACAGGAGGCTGAAGGACAAAAAGGAACCGGCGAAGAAACCGCGAAAGATGGTGGCACCGGCGTTGCCCGACTCTCCCATTGATGAATTGAGAGTGGTGGCCGAGCCAGGTAGTGATTACGCTTCAGGGTCGGGGTCAGGTTCAAGCCCATTCGGTGACGTTGGGTTGCGCAATGTGGTACCTAGAAGTGTTGGTGACGATATGCCACCGATGAGAAGGTATTATGAGCCTTCACGGTCTGTTATGGAACATAGAGCTATTGCTTGCGTGGAGTCGCAGTTAGGAGAGCCATTGAGGGAGGACGGACCTATTCTTGGGATTGAATTTGATCCATTACCACCTGATGCTTTCGGTGCACCCATAGTGGCAGAACAGCAGAAGCGATCTGCACATTCGTATGGAGACAAATATGAACAACGGGATGCAAAATCAAATAAAGCAACTACAAGGGCATTTCCTGAATATTCATTTCTTCCGGACCAGTCTAATCTTAGAGCTGATGCTTATGGACCAGTTGCCCAATCACATTATCCAGATTCATTAGTCGAGGTTTCAGCAGGAAGGACACCATCATTTTTGCTTGGTCATGAACAATTGAACAGGAGCCATAATTACCATGGTCAGGTCTCAAGGGTTCGACTCTTACCTCAACAGGAGAAGCAAGGTGTTACCATTCCACCTCCTGCTGAAGATAGCGCATTTGTCCCTGCAAGGGATTCTTTTGCAAGTATCAGAATGAATTCTCAGTTTACTGATCACTCAATTGTTGGACCAGAAAATCAATATGTATTGCCTGATGGGCATGCTTTTCCAAACGATGTCATCATTAGGATGGAAAGGAAACGCAAGAGTGATGAAGCTCGTATGAACAAAGAAGCTGAAGCCCATGAGATAAGAATGCGAAAAGAGCTTGAGAAACAGGATATTTTGAGGAAAAAGAGTGAAGAACGAATGAGGAAAGAGATGGAAAAGCAAGATCGCGAAAGGAGGAGAGAAGAGGAGAGGTTACTGCGAGAGAAGCAGCGGGAAGCGGAGAGATTGAAGCGTGAGGAAAGACGTGAACATGAACGGAGGGAAAAGTTTCTGCAGAGGGAATATTTGAGGGCTGAGAAAAGGAGGCAAAAAGAAGCACTTCGAAAAGAAAAGGAAGCAGTGAGACGCAAAGCCGCAATAGAGAAGGCTACTGCTCGTAGAATTGCCCGTGAGTCTATGGAGCTTATTGAGGACGAACAACTTGAACTTATGGAACTGGCGGCTGCAAACAAAGGATTATCCTCAATATTAAGTCTTGATCATGATACTCTGCAGAATCTTGAATCATTCAGAGATTATCTAGTTGCATTTCCACCCAAGTCTGTGCAATTGAAAATACCTTTCAGCATTCAACCTTGGATCAATTCAGAGGAGAACATTGGTAACCTTCTCATGGTGTGGAGATTTTTTATCACATTTTCTGATGTTCTAGAGCTATGGCCCTTTACACTTGATGAGTTTGTTCAAGCTCTTCATGACTATGATTCAAGATTACTAGGTGAGATTCACATTTGTCTCCTGAGACTGATTGTAAAAGATATTGAAGATGTAGCAAGAACACCTTCTACTGGATTGGGAATAAATCAGAATGGTGTTGCCAACACTGGAGGTGGACATCCGCAGATTGTGGAGGGGGCATATGCATGGGGGTTTGACATTTGCAACTGGCAGAAACATTTAAACACGTTAACATGGCCTGAAATATTTCGACAATTAGCATTGTCAGCTGGCTTTGGACCACAGTTGAAGAAGAGGAGTTTGGCATGGCCTGAAATGCATGGCAATGACGAGGCTAAATGCGGTGAGGACGTAGTGTCTACTCTTCGCAATGGTTCAGCTGCTGAAAATGCATTTGCTATCATGCAAGAGAAAGGTTTGCTAGCTCCACGAAGATCTAGGCATCGGCTAACTCCTGGAACTGTCAAATTTGCTGCTTTTCATGTCCTTTCACTAGAAGGAAGTGAGGGGTTAACAGTACTAGAACTTGCAGACAAGATACAGAGATCTGGGCTTAGGGATCTGTCTACAAGCAAAACACCAGAGGCTTCCATTTCTGTTGCTTTGACAAGGGATACTAAGCTTTTTGAAAGAATAGCTCCTTCCACATATCGTGTACGAGCTCCCTACAGGAAGGATCCAGATGATGCCGAGGAAATACTTTCTGTAGCTAGAAAGAAAATTCAGATATTTCAGAATGGGTTTTTAGCTGGAGAAGATGCTGATGACGTTGAAAGAGACGAAGAATCTGAATGTGATGATGTTGATGAAGATCCTGAAGTTGATGATTTAGCAACGACAGCTTTGATGAATGAAGATGTTAACAAAGGAGATACTAACTTAGAAGTTGAGAATGAGAACTCATGTCACGTTATTGTTGGAAATTCACAAAATGAAGGTGTCAAGGATCTATCATCCTCCCCCCTAAGTGGTTCCAAGGACGTAAAATATTTGGATATAACTACAGAGCAATATGCTGCTGTTGATGAGACTACTACCAGTGATCTCGATCAAGAGAATATGGAGATTGATGAAAGCAAGGAAGGTGAATCATGGATTCAAGGACTTACAGAAGGTGAGTATCATGATCTTAGTGTTGAGGAGCGCCTGAATGCCCTTGTTGTCTTAACCAGCATTGCAAATGAAGGAAACTCTATTCGCCTTGTTCTAGAGGACCGTTTGGAAGCTGCAAATGCTGTTAAGAAGCAAATGTTGGCAGAGGCACAGATTGATAAATCTCGCCTAAAAGAAGAGATCATCAATAAATCTGATTTTCCAATCCACATGGTGAGCAAGGTGGAAACTGAACTTAATGGTTCCACTATGGAGGGTGGTCAAAGCCCATTACCTGTTGCTGAGAACAAGAACAATGAAACAATCCCAAGCACTGCAGAAAACCTTGGTAGTGTGCCTAATGAGAGGGCTACTTTAGTGGCAGATCTTTTCCCGGGGCCAGATAACTGTTTGTCTCATCAATATGGACATGCTTCAAAGAGGTCACGCTCACAGTTAAAATCCTATATTGCCCATAGAGCTGAAGAGATGTACACATATAGGTCCCTGCCACTTGGTCGAGATCGTAGGCGTAATCGATACTGGCAATTTGTTGCGTCTTCTTCAAGCAACGATCCCGGTTCTGGGAGAATATTCGTTGAAATGTATGATGGAAAATGGAGGCTTATTGATTCTGAAGAGGACTTTGATGCTCTTTCGATGGCTTTGGACACACGTGGGGTTAGAGAGTCACACCTACGCATAATGTTGCAAATGATAGAGACATCCTTTAAGGAAAATGTTCGAAGGAATCTGCAGTGTGCCAATTTTTTGGTTCAAAGTGGAACTACTCCTAAAAATGAAAATGATGAATCCAGTTCTAGTCCTGATTGCAACACTGTGTTTAACAGTCCTAGCAGTACTGTTTGTGGTTTAAATTTGGATACGATGGTAACATCATCTTCATTCAGAATTGAGCTTGGGAGAAATGAAAATGAAAAGAAGGCTGCATTTAGAAGGTATCAAGACTTGCAGAGGTGGATGTTAAGAGAGAGCTTTAACACAGCAACATTATGTGCCATGAAATTTGGAGAAAAAAGGTGCACACAGCTGTTGGACATTTGTGATTTTTGTTTGTGCTTGTTCGATTCTGAACATTCTCACTGCACTTCATGCCATCAAACTTTTGACACTAGTGGGAATGATATTAATTTTTTTGAACACAAACTTCACTGTGAGAGGGAAAGGAAGTCTTACCATTGGGATACACACACTTTAGATGCATCTCTTCCCCTCAAAAGTAGATTGGTCAAGGCCGTCTTAGCTGTCATTGAGGCACATGTTCCGTCAGAAGCTTTTCTCTCGTTTTGGACAGAACGTAGGAAAAATTGGGGTGTCAGGATGGACATGTCATCATCCATTGAAGAGCTGCTACAGATATTGACCCTGTTTGAAAGTGTAATTAAGCGAGATTTTCTAAAATCAGACTTTACTACGACAGACGAGCACCTGAGCTCTTGTTCCGTCTCTGGGAATGTTATACATGACCAATCAGATGTTGGGTCTGTTCTTACGTTACCATGGATTCCACGGACGAGTGCAGCTCTTGCTTTGAGGCTTTTTGAGGTAGATGCATCGATTTATTATATCGGGTGTGAGAAACCAGAGCCTGATCAGTACAAGGAAACTGGAGAATATATGAACTTTCCCAGTAGATATGTTCAGGTCAAGAATGATGAACGGAATAAACTGAATGAACTGGACTATGATGATCTGATGAAGAAAGAGAACTCAGCTGATCCAAAGAGTTCGAGGAACAGCTACAAACGTGGCCGAGGGAGTCGAGATCATGGACGTCGTAGAAGGTGGCAGAAAAAGGTTAATGGTTCTAAATCTGGCCGTGTCCGGCAACATGTCAAGAGTAATGAGAAAATGAATCAAGGACCAAGGCAATTAGGACAAGGAACACAGGTTATGGGCGTACGGGGCCGCCGAACGGTAAGGAAGAGAAGGGCTGAGAAGAGCATTCAAGATGAAGGTTTGTTGGGCATAGTGCCTAGTAGTACTCAGAATAGAGATGAATCACCAAAAGATTTTATTGGTGAATGGGAGGATGAAAAGATTGATGGATTCGTAGATATGGAAGATGAAGAGAACGTTTTGGAAGATGAGGAGAATGTTTTGGAAGATGAGGAGAACGAGGAGAATGAGGAGAATGTAAACAACGTAGAACCAATGGACTCTGACGACGATGCCCATGCAGTTGGGTATGAGCGAGGGAGTTGGGACTTTGGTTTTGACGGCACCTCCAACAGATGGAATGGTGATTTAGGGATAGCTAGTGATGAGGATGTGGATTTATCTGAGGACTACAATGGCACTGAAGAGGCAGGAAACGATGATTTGGAGTTAGATGTCGATACGAGCGAGGAGTCGGATTGTTCACCAAATAGGATAGGCAACAACGGTGGAGGTGAATCTCCTGTCTCAGACGACTATAGTGATTAA 5265 43.4 MEAAASDGENHNQNNDNINKISNSSEGLSKPKRQMKTPFQLETLEKAYALETYPSESTRAELSEKLGLTDRQLQMWFCHRRLKDKKEPAKKPRKMVAPALPDSPIDELRVVAEPGSDYASGSGSGSSPFGDVGLRNVVPRSVGDDMPPMRRYYEPSRSVMEHRAIACVESQLGEPLREDGPILGIEFDPLPPDAFGAPIVAEQQKRSAHSYGDKYEQRDAKSNKATTRAFPEYSFLPDQSNLRADAYGPVAQSHYPDSLVEVSAGRTPSFLLGHEQLNRSHNYHGQVSRVRLLPQQEKQGVTIPPPAEDSAFVPARDSFASIRMNSQFTDHSIVGPENQYVLPDGHAFPNDVIIRMERKRKSDEARMNKEAEAHEIRMRKELEKQDILRKKSEERMRKEMEKQDRERRREEERLLREKQREAERLKREERREHERREKFLQREYLRAEKRRQKEALRKEKEAVRRKAAIEKATARRIARESMELIEDEQLELMELAAANKGLSSILSLDHDTLQNLESFRDYLVAFPPKSVQLKIPFSIQPWINSEENIGNLLMVWRFFITFSDVLELWPFTLDEFVQALHDYDSRLLGEIHICLLRLIVKDIEDVARTPSTGLGINQNGVANTGGGHPQIVEGAYAWGFDICNWQKHLNTLTWPEIFRQLALSAGFGPQLKKRSLAWPEMHGNDEAKCGEDVVSTLRNGSAAENAFAIMQEKGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSEGLTVLELADKIQRSGLRDLSTSKTPEASISVALTRDTKLFERIAPSTYRVRAPYRKDPDDAEEILSVARKKIQIFQNGFLAGEDADDVERDEESECDDVDEDPEVDDLATTALMNEDVNKGDTNLEVENENSCHVIVGNSQNEGVKDLSSSPLSGSKDVKYLDITTEQYAAVDETTTSDLDQENMEIDESKEGESWIQGLTEGEYHDLSVEERLNALVVLTSIANEGNSIRLVLEDRLEAANAVKKQMLAEAQIDKSRLKEEIINKSDFPIHMVSKVETELNGSTMEGGQSPLPVAENKNNETIPSTAENLGSVPNERATLVADLFPGPDNCLSHQYGHASKRSRSQLKSYIAHRAEEMYTYRSLPLGRDRRRNRYWQFVASSSSNDPGSGRIFVEMYDGKWRLIDSEEDFDALSMALDTRGVRESHLRIMLQMIETSFKENVRRNLQCANFLVQSGTTPKNENDESSSSPDCNTVFNSPSSTVCGLNLDTMVTSSSFRIELGRNENEKKAAFRRYQDLQRWMLRESFNTATLCAMKFGEKRCTQLLDICDFCLCLFDSEHSHCTSCHQTFDTSGNDINFFEHKLHCERERKSYHWDTHTLDASLPLKSRLVKAVLAVIEAHVPSEAFLSFWTERRKNWGVRMDMSSSIEELLQILTLFESVIKRDFLKSDFTTTDEHLSSCSVSGNVIHDQSDVGSVLTLPWIPRTSAALALRLFEVDASIYYIGCEKPEPDQYKETGEYMNFPSRYVQVKNDERNKLNELDYDDLMKKENSADPKSSRNSYKRGRGSRDHGRRRRWQKKVNGSKSGRVRQHVKSNEKMNQGPRQLGQGTQVMGVRGRRTVRKRRAEKSIQDEGLLGIVPSSTQNRDESPKDFIGEWEDEKIDGFVDMEDEENVLEDEENVLEDEENEENEENVNNVEPMDSDDDAHAVGYERGSWDFGFDGTSNRWNGDLGIASDEDVDLSEDYNGTEEAGNDDLELDVDTSEESDCSPNRIGNNGGGESPVSDDYSD 1754
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18890976 18906799 - MC01g1436 Mch1g1893 676785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1893 1754 ProSiteProfiles HARE-type HTH domain profile. 728 797 IPR007759 GO:0006355(InterPro)
Mch1g1893 1754 ProSiteProfiles 'Homeobox' domain profile. 27 87 IPR001356 GO:0003677(InterPro)
Mch1g1893 1754 MobiDBLite consensus disorder prediction 1504 1592 - -
Mch1g1893 1754 ProSiteProfiles DDT domain profile. 546 605 IPR018501 -
Mch1g1893 1754 Gene3D - 21 98 - -
Mch1g1893 1754 CDD homeodomain 32 87 IPR001356 GO:0003677(InterPro)
Mch1g1893 1754 MobiDBLite consensus disorder prediction 114 133 - -
Mch1g1893 1754 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 1 1754 IPR044977 GO:0006357(InterPro)
Mch1g1893 1754 MobiDBLite consensus disorder prediction 1631 1754 - -
Mch1g1893 1754 MobiDBLite consensus disorder prediction 1701 1729 - -
Mch1g1893 1754 MobiDBLite consensus disorder prediction 1504 1530 - -
Mch1g1893 1754 MobiDBLite consensus disorder prediction 382 413 - -
Mch1g1893 1754 Pfam Homeodomain 30 86 IPR001356 GO:0003677(InterPro)
Mch1g1893 1754 MobiDBLite consensus disorder prediction 1531 1552 - -
Mch1g1893 1754 MobiDBLite consensus disorder prediction 1631 1664 - -
Mch1g1893 1754 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 935 978 IPR028942 -
Mch1g1893 1754 Coils Coil 986 1006 - -
Mch1g1893 1754 SMART HOX_1 29 91 IPR001356 GO:0003677(InterPro)
Mch1g1893 1754 Coils Coil 389 473 - -
Mch1g1893 1754 Pfam DDT domain 547 602 IPR018501 -
Mch1g1893 1754 MobiDBLite consensus disorder prediction 7 31 - -
Mch1g1893 1754 Coils Coil 1630 1660 - -
Mch1g1893 1754 SMART testlast3 546 605 IPR018501 -
Mch1g1893 1754 MobiDBLite consensus disorder prediction 1 37 - -
Mch1g1893 1754 Pfam HB1, ASXL, restriction endonuclease HTH domain 728 795 IPR007759 GO:0006355(InterPro)
Mch1g1893 1754 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1106 1178 IPR028941 -
Mch1g1893 1754 SUPERFAMILY Homeodomain-like 21 87 IPR009057 -
Mch1g1893 1754 MobiDBLite consensus disorder prediction 1732 1754 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0170 Mch-Chr2:1281667 Mch1g1893 Mch-Chr1:18890976 7.09E-16 transposed
Mch2g1500 Mch-Chr2:11418867 Mch1g1893 Mch-Chr1:18890976 3.41E-08 transposed
Mch8g2474 Mch-Chr8:27665762 Mch1g1893 Mch-Chr1:18890976 4.60E-71 transposed
Mch1g1893 Mch-Chr1:18890976 Mch4g0285 Mch-Chr4:1830103 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42804 PF15613 WSD 9.70E-14 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1893 - - - 0.0