Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1897 AATCTCCTTTACATTTCCTTCTTCAATAATTCCCTCAATACCACCCTTCCATCCAATATCACTGCCTGTACCAATCTCGAGTACATCGACCTCGGCCAGAATCTCCTCACTGGTTCTCTCCCTTCCACCATTTCTGATCTCCCCAACCTCCGCTACTTGGACTTGTCTGGAAACAACTTTTCCGGCGAAATTCCCCCCACGTTCGGCCGCTTTCAGAAGCTCGAGGCCTTCTCCGTCATTCTCAATCTCATCGGCGGCAACATTCCGCCGGCTATCGGGAACATTAGTACCCTTAGGATGCTCAATCTCTCTTACAACCCCTTCGAGCCGGGTGTAATCCCGCCGGAGCTGGGGAATCTGCCGAATCTTGAGGTTCTCTGGTTGACGGATTGCCATTTGAAGGGAGAGATTCCGGCGTCGCTGGGTCAGCTCAAGCGACTCGTTCTTCTGGACTTGAGCATGAACAAACTTAGCGGGTCGTTCCCGCAGGAGCTCACGGGGTTGTCCAGCGTCACACAGATTGAGTTGTTTAACAATTCGTTGTCCGGGAAGTTACCGGATAGTGGGTTCTCGAATCTCAAATCGTTGCGGTTATTCGACGTGTCGATGAACAATATCAGTGGGCCACTTCCGGAAGAGTTGTGTGGGTTACCGCTGGAAAGCCTTAATCTCTTTGAGAATCGGTTGGAGGGGAGATTGCCGGAAATCTTGGGGAACTCGACCACTTTGGTGGTGATCAAGCTATTTGGAAACAAACTCACGGGGCCATTACCAAAAGATTTGGGGAAATATTCGCCTCTGAGATCGTTGGATCTTTCGGACAACCACATTTCCGGCGAGCTTCCTGACAATTTGTGCGAGAAAGGGGAATTGGTGGAGTTAATGACGCTCAACAACAATGTTTCCGGCAAAATTCCGCCGCGTTTGGGTGATTGCCACTCTCTGCTTAGGATTCGATTTGCAAACAATAACTATTCGGGTCCCATTCCGGAAAATTTCTGGGGGCTCCCAAATGCTTATCTTATGGAACTTGCAAACAACTCGTTCTCTGGTCCAATCTCCCCGAAAATCGGCAATGCCAAGAACTTGGGTCTGCTTCTTATTTCGCATAACAACTTCTCAGGAAGAATTCCGGAGGAGATTGGCTCTTTGGAAAATCTGGTTGAGTTTTCTGGCGACTATAACAACTTCATTGGACATCTACCTGATTGCATTACGAAAATGAAAAGGATTGGCAAGTTGGATCTTCAAAGTAACATGCTCTCTGGGGAGCTGAGCAGCGATCTTGAGGCCTGGCAGAAGCTGAATGAGCTCAACCTGGCAAGGAATAACTTTTCTGGGGTAATTCCCCAAGAAATTGCTAGCTTGGCAGGGCTTAATTACCTCGATCTTTCGAGCAATCAGTTTTCTGGGGAAATCCCAACTGGGTTACAGAATTTGAACCTTAATGTTCTGAATCTATCATACAATCACTTATCTGGGAGGCTTCCTTCCTATTTCTTGACAGCGGTGTACAAAAATAGCTTTCTGGGCAATCCTGAGCTGTGTAAGAAGGAAGGTGGTGTGTGTGAAAAAGTTAAAATTAAACGCAGGGAAGGAGGAGCTTGCATTTGGCTGTTGAGATTCGTCTTTATACTTGCAGGTTTAATGTTCATTTTGGGTGTGGTTCTGTTCCACGTTAGGTACAAGAAATTCATAAGGACAAGAAGTCTCAATGACAAATCCAAATGGACGGTGATATCGTTCCACAAGCTCTCTTTTAACGAGGATGAGATTCTGGGTGGCCTGGATGAGGACAACGTGATAGGCAGCGGAGGCTCTGGCCAAGTCTACAAGGTTACTCTCGGCAACGGCGAGATCGTCGCAGTTAAGAAACTTTGGGCTGAGGCGGCCCGAGATCGCAGGAGTGTCGATCTAGAGAAAGATTGGAACAATGATAATGGTTTTGATGCAGAAGTGAAAACTCTGGGTAAAATCAGGCATAAAAACATAGTGAAACTATGGTGTTGTTGCACCAATGGAGATAGCAAGCTTTTGGTTTACGAGTACATGCCTCATGGGAGCTTAGGCGATATGCTTCATAGCAGTAAAAGAGACGCATTGGACTGGCCAACAAGATACAAGATTGCCTTGGATGCTGCTGAGGGGCTTTCTTATCTTCATCACGACTGTGTTCCTCCAATTGTTCACAGAGATGTCAAGTCCAATAACATCTTGTTGGATGCCGATTTCGGAGCTCGAATAGCTGATTTCGGAGTAGCTGTGGCCATTGATACATCCAAAGATAAATCCATGTCAGTCGTTGCTGGTTCTTGTGGTTATATCGCCCCAGAATATGCATACACCTTGAAAGTGAAAGAAAAGAGCGACATCTATAGTTACGGGATGGTTATCCTTGAATTGGTAACCGGGAGGCGCCCGACCGACCCCGAGTTCGAGGAGAACGATTTGGTGAAATGGGTATGCAACGTGTTAGAGCGAAAAGGCATCAACCATGTCATAGACCCCAAACTGCATTCCTGTTTTCATGAGGAAATATTGAAGGTACTCAACATTGGCCTCCTCTGCAGCAGTCCTCTGCCGATCAACCGCCCGCCGATGAGAATAGTGGTTACGTTGTTGCAAGAAGCTCGTAACGGTATCAATAGCCATTCAAAGAGCTTCAAGAAAGACGGTAGACTATCTCCAATATACGATTGTGAGGAAGAATCGGAACATGGAAATGTGGTTAGTAACAGTCCCGTAAGAGCATTTTCTTAG 2760 46.67 NLLYISFFNNSLNTTLPSNITACTNLEYIDLGQNLLTGSLPSTISDLPNLRYLDLSGNNFSGEIPPTFGRFQKLEAFSVILNLIGGNIPPAIGNISTLRMLNLSYNPFEPGVIPPELGNLPNLEVLWLTDCHLKGEIPASLGQLKRLVLLDLSMNKLSGSFPQELTGLSSVTQIELFNNSLSGKLPDSGFSNLKSLRLFDVSMNNISGPLPEELCGLPLESLNLFENRLEGRLPEILGNSTTLVVIKLFGNKLTGPLPKDLGKYSPLRSLDLSDNHISGELPDNLCEKGELVELMTLNNNVSGKIPPRLGDCHSLLRIRFANNNYSGPIPENFWGLPNAYLMELANNSFSGPISPKIGNAKNLGLLLISHNNFSGRIPEEIGSLENLVEFSGDYNNFIGHLPDCITKMKRIGKLDLQSNMLSGELSSDLEAWQKLNELNLARNNFSGVIPQEIASLAGLNYLDLSSNQFSGEIPTGLQNLNLNVLNLSYNHLSGRLPSYFLTAVYKNSFLGNPELCKKEGGVCEKVKIKRREGGACIWLLRFVFILAGLMFILGVVLFHVRYKKFIRTRSLNDKSKWTVISFHKLSFNEDEILGGLDEDNVIGSGGSGQVYKVTLGNGEIVAVKKLWAEAARDRRSVDLEKDWNNDNGFDAEVKTLGKIRHKNIVKLWCCCTNGDSKLLVYEYMPHGSLGDMLHSSKRDALDWPTRYKIALDAAEGLSYLHHDCVPPIVHRDVKSNNILLDADFGARIADFGVAVAIDTSKDKSMSVVAGSCGYIAPEYAYTLKVKEKSDIYSYGMVILELVTGRRPTDPEFEENDLVKWVCNVLERKGINHVIDPKLHSCFHEEILKVLNIGLLCSSPLPINRPPMRIVVTLLQEARNGINSHSKSFKKDGRLSPIYDCEEESEHGNVVSNSPVRAFS 919
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18919743 18923001 + MC01g1439 Mch1g1897 676789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1897 919 FunFam Leucine-rich receptor-like protein kinase family protein 113 212 - -
Mch1g1897 919 FunFam Receptor-like protein kinase HSL1 580 683 - -
Mch1g1897 919 Gene3D Ribonuclease Inhibitor 1 110 IPR032675 -
Mch1g1897 919 Gene3D Ribonuclease Inhibitor 169 526 IPR032675 -
Mch1g1897 919 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 684 891 - -
Mch1g1897 919 Pfam Leucine rich repeat 9 60 IPR001611 GO:0005515(InterPro)
Mch1g1897 919 Pfam Leucine Rich Repeat 147 168 IPR001611 GO:0005515(InterPro)
Mch1g1897 919 Pfam Leucine Rich Repeat 459 480 IPR001611 GO:0005515(InterPro)
Mch1g1897 919 Pfam Leucine Rich Repeat 267 286 IPR001611 GO:0005515(InterPro)
Mch1g1897 919 Pfam Leucine Rich Repeat 481 500 IPR001611 GO:0005515(InterPro)
Mch1g1897 919 Pfam Leucine Rich Repeat 195 217 IPR001611 GO:0005515(InterPro)
Mch1g1897 919 Pfam Leucine Rich Repeat 122 144 IPR001611 GO:0005515(InterPro)
Mch1g1897 919 Pfam Leucine Rich Repeat 98 120 IPR001611 GO:0005515(InterPro)
Mch1g1897 919 Pfam Leucine Rich Repeat 363 384 IPR001611 GO:0005515(InterPro)
Mch1g1897 919 Pfam Leucine Rich Repeat 219 239 IPR001611 GO:0005515(InterPro)
Mch1g1897 919 Pfam Leucine Rich Repeat 434 456 IPR001611 GO:0005515(InterPro)
Mch1g1897 919 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1 88 - -
Mch1g1897 919 Pfam Protein kinase domain 599 817 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g1897 919 ProSitePatterns Protein kinases ATP-binding region signature. 602 625 IPR017441 GO:0005524(InterPro)
Mch1g1897 919 ProSiteProfiles Protein kinase domain profile. 596 878 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g1897 919 SMART serkin_6 596 842 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g1897 919 SUPERFAMILY RNI-like 2 326 - -
Mch1g1897 919 Gene3D Phosphorylase Kinase; domain 1 578 683 - -
Mch1g1897 919 Gene3D Transferase(Phosphotransferase) domain 1 684 897 - -
Mch1g1897 919 SUPERFAMILY Protein kinase-like (PK-like) 591 874 IPR011009 -
Mch1g1897 919 Gene3D Ribonuclease Inhibitor 111 168 IPR032675 -
Mch1g1897 919 FunFam Receptor-like protein kinase HSL1 218 525 - -
Mch1g1897 919 ProSitePatterns Serine/Threonine protein kinases active-site signature. 728 740 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g1897 919 SUPERFAMILY RNI-like 244 510 - -
Mch1g1897 919 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 1 878 IPR050647 -
Mch1g1897 919 ProSiteProfiles Leucine-rich repeat profile. 266 288 IPR001611 GO:0005515(InterPro)
Mch1g1897 919 SMART LRR_typ_2 168 192 IPR003591 -
Mch1g1897 919 SMART LRR_typ_2 456 479 IPR003591 -
Mch1g1897 919 SMART LRR_typ_2 120 144 IPR003591 -
Mch1g1897 919 SMART LRR_typ_2 47 71 IPR003591 -
Mch1g1897 919 SMART LRR_typ_2 261 288 IPR003591 -
Mch1g1897 919 SMART LRR_typ_2 193 217 IPR003591 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1897 Mch-Chr1:18919743 Mch7g0882 Mch-Chr7:13388969 2.24E-88 dispersed
Mch1g0344 Mch-Chr1:7250580 Mch1g1897 Mch-Chr1:18919743 3.02E-55 transposed
Mch1g1897 Mch-Chr1:18919743 Mch3g1106 Mch-Chr3:14458785 9.46E-173 wgd
Mch1g1897 Mch-Chr1:18919743 Mch4g0284 Mch-Chr4:1818025 2.85E-156 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77161 PF00069 Pkinase 3.70E-43 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1897 - - - 0.0