Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1903 ATGGGTGCTCTCATCGATCTCAATACCACTGAAGAAGACGAAGCCCCCTCTTCTGCTGCCTCTTCCGCTTCCTCCTCCTCGGCTTCTGCTTTCACCTCCTCGCCTTCCCCCTCTGTCGCCTCCTCAATTTGCTTGGAGCTATGGCACGCCTGTGCGGGCCCACTTACTTCTCTGCCCAAGAAAGGGAGCTTGGTTCTGTATTTGCCGCAGGGTCACTTGGAGATGCTGGAATTTCCACCCACGGCCTGTGATCTCCCTCCCCACATCCTCTGTCGCGTCATTGATGTTCAGCTCCATGCCGAGGCAGGGAGTGACGAGGTTTATGCTCAGGTTTCATTGTTTCCTGAAAACGAGCAAATAGAGAACAGGATGCAGGAAGAGATGAACAATGACAGTGAGGAGGAGGATGTTGAAGGAGGTGAAAAGACTACAACACCCCACATGTTCTGCAAGACCCTTACTGCTTCAGACACTAGTACTCATGGAGGCTTCTCCGTTCCCAGACGAGCAGCAGAGGATTGCTTCCCGCCATTGGATTATAATCAACAGAGGCCTTCACAAGAGCTTGTTGCAACGGATCTCCTTGGGCAAAAATGGAAGTTCAGGCACATATATCGCGGGCAACCTAGAAGGCATTTGCTAACCACTGGATGGAGTGCATTTGTGAACAAGAAGAGGCTTGTTTCTGGCGATGCAGTGCTGTTTCTCAGGGGTAACGATGGGGAATTACGTTTGGGAATTCGAAGAGCTGCGCAGCTTAAAAGTGGCTCTGCCTTTCCAAATATTTGCAGTCAGCATGTCAGCTCTAGTAGTATCATGGAAGTGGTTAATGCTATATCTACTAAAAGTTCCTTTAGCGTATACTACAATCCCAGGGCTAGCTCTTCACAGTTTGTCTTGCCTCTTCACAAGTTCTTGAAGAGCATTAATCATCCTTTCTCTGTTGGAATGAGGTTTAGGCTGAGTTTTGAAACCGAAGATGCTGCAGATCGAAGATACACTGGACTGATATCTGGAGTTGGTGATGTGGATCCTATCAGGTGGCCAGGATCAAGGTGGAGGTCCCTAGTGGTGAGGTGGGACGATGTTGAAAGTAACAGGCATGGCCGGGTTTCCCCATGGGAGATCGAGCCCTCTGGTTCTGCCTCCACACCTAGCAACTTGGTTCCACCTGGCCTGAAAAGGACCAGGATTGGGCTATCTTCTACAAAACTAGAGTTTCCAGTTCCAAATGGGATTGGAACATCAGACTTTGGGGAATCTTTAAGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTTTGGGTTACAATACTCCTCCCATTGATGGCGACAACATCACTCGTCATCCACCTGAAAAGAGGAGATTGTTTCCTGGTTTGCATGGTTCTGGGATAGCCATGATGAGAAATGGTCCAAGAAACCCATTTATCAACTCCGAAACTTCCTCCCGGGGTATCGTGTTTGATGAATCCTTCCAATTCCATAAGGTCTTGCAAGGTCAAGAAATATTTCCAAGTCCGTTTTATGGTAGAGCCATGGCCACCAATGAAGTTAAGGCAAGTGGTGGTTGCGGTGCTATCGAAGGCATTCGATTGTCTAGGTCTAAAGATGGATGGCCGCCAATGGCAATGCAATGTGAAAATTTCCTAGGACGCTCTTCCATTCCTTCTGTACAAGTCTCATCACCATCTTCTGTGTTCATGTTCCAGCAGTCAATGGTTCCCGTTCAAAGCTTTAATACACATAACCGTGGCGATTTCGCAGAGCAGAGGATTACAAACAAAAGTACATCCCTTTCTGGGACAGCATTTACGACCGACCATAGCTCGAACACTGAAGTCCCACAGGGGATGCATCCCACTTCATTGGGCGAGCAAAACCAGCTCGGCCTATCACATCTGTCCACAACAGCATCAGTGTTTTCAGGCTGTAAGGATCTGTCTTCAACATGTAAAGCTGGGTGCAGATTGTTTGGTTTTTCATTGACAGAGGAAAAGAATGCTGGGAATGCAGACAAGGCTTCTCCAGCAACATCTGCAGTAAATGCAGGAACAACCACTGTTCTATCCAATATTGGGGTGCAATGTCCTCGGAAGTCTCCTCTGATGAGCAAGGTGGTTGGAAGCAACTGTACCAAAGTAAGTAACTTACCTGCTCGTGCCGTAGAGGCGATATATTTTACGTAA 2187 47.87 MGALIDLNTTEEDEAPSSAASSASSSSASAFTSSPSPSVASSICLELWHACAGPLTSLPKKGSLVLYLPQGHLEMLEFPPTACDLPPHILCRVIDVQLHAEAGSDEVYAQVSLFPENEQIENRMQEEMNNDSEEEDVEGGEKTTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYNQQRPSQELVATDLLGQKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFLRGNDGELRLGIRRAAQLKSGSAFPNICSQHVSSSSIMEVVNAISTKSSFSVYYNPRASSSQFVLPLHKFLKSINHPFSVGMRFRLSFETEDAADRRYTGLISGVGDVDPIRWPGSRWRSLVVRWDDVESNRHGRVSPWEIEPSGSASTPSNLVPPGLKRTRIGLSSTKLEFPVPNGIGTSDFGESLRFQKVLQGQEILGYNTPPIDGDNITRHPPEKRRLFPGLHGSGIAMMRNGPRNPFINSETSSRGIVFDESFQFHKVLQGQEIFPSPFYGRAMATNEVKASGGCGAIEGIRLSRSKDGWPPMAMQCENFLGRSSIPSVQVSSPSSVFMFQQSMVPVQSFNTHNRGDFAEQRITNKSTSLSGTAFTTDHSSNTEVPQGMHPTSLGEQNQLGLSHLSTTASVFSGCKDLSSTCKAGCRLFGFSLTEEKNAGNADKASPATSAVNAGTTTVLSNIGVQCPRKSPLMSKVVGSNCTKVSNLPARAVEAIYFT 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18958090 18963491 - MC01g1444 Mch1g1903 676795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1903 728 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 42 715 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Mch1g1903 728 SUPERFAMILY DNA-binding pseudobarrel domain 144 257 IPR015300 -
Mch1g1903 728 MobiDBLite consensus disorder prediction 1 31 - -
Mch1g1903 728 MobiDBLite consensus disorder prediction 370 392 - -
Mch1g1903 728 Pfam B3 DNA binding domain 149 250 IPR003340 GO:0003677(InterPro)
Mch1g1903 728 CDD B3_DNA 147 249 IPR003340 GO:0003677(InterPro)
Mch1g1903 728 Pfam Auxin response factor 275 356 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Mch1g1903 728 MobiDBLite consensus disorder prediction 598 626 - -
Mch1g1903 728 Gene3D - 147 251 IPR015300 -
Mch1g1903 728 FunFam Auxin response factor 312 383 - -
Mch1g1903 728 FunFam Auxin response factor 147 251 - -
Mch1g1903 728 MobiDBLite consensus disorder prediction 11 31 - -
Mch1g1903 728 ProSiteProfiles B3 DNA-binding domain profile. 149 251 IPR003340 GO:0003677(InterPro)
Mch1g1903 728 Gene3D - 312 385 - -
Mch1g1903 728 SMART B3_2 149 251 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1903 Mch-Chr1:18958090 Mch2g0367 Mch-Chr2:2735698 1.63E-138 dispersed
Mch1g1903 Mch-Chr1:18958090 Mch1g2064 Mch-Chr1:20009579 2.84E-102 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42806 PF02362 B3 1.50E-21 CL0405 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1903 K14486 - csv:101220018 1191.79