Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1906 ATGGGAAAGCATTCGAAGACCAGTTGCAAGTCGGCTTCCCACAAGCTCTTTAAGGATAAGGCAAAGAACCGAGTCGATGATCTGCAAAGCATATTTGTAGATTTGCAATATGCAAGGAAAGAGAGCCGCACAGTTGATGTGGCAGTTCTTGAGGAACAAGTCCATCAGATGCTTCGTGAGTGGAAAGCCGAGCTGAACGAGCCCTCTCCAGCTTCCTCTTTGCAACAAGGTGGAAGTCTTGGGTCATTTTCATCAGACATTTGTCGATTGTTACAACTTTGTGAGGAGGATGATGATGCATCTAGTCCATTAGCTGCTCCTAAGCCTGAGCCTAATGAACAAAATCTGCAGGTTGGAGATACTACGGCACTTCAAGAGGTTCTTCATATTCTTAACCTGCTTCAGGGATTTCACATGAATCGTGTACACCAAGAACCAAGCTTCTCTCTAGTCGATCAATGCAAGAACTCCCCTTCAGGAGTTCATGGTATGGCTATGAATAACTTGGAAGGACCTACACATCTGGAGTGTCATCAGTTTGATTTACATCAAGGAATTGAGCACAACTTTTACTCTTTCCTTAATGGTAGAGGTTTGTGTGGTGAGGGTGCAATTTCTCATGTTTCTAGCTACTGTCCTAGCATATGCCCTCCCCCTGCTGCTTTCTTAGGCCCAAAATGTGCACTTTGGGATTGCCCACGACCTGCCCAAGGGTTGGATTGGTGTGAGGACTACTGTAGTAGTTTTCATGCTGCCTTGGCCTTGAATGAAGGCCCTCCTGGAATGGGTCCAGTTTTACGACCTGGTGGCATTGGTCTGAAGGATGGTTTGCTTTTTGCTGCTCTTAGTGCAAAGTCACAAGGAAAAGATGTTGGCATCCCTGAATGTGAGGGAGCTGCCACTGCAAAATCCCCCTGGAATGCTCCTGAGCTTTTTGATCTGTCAATATTGGAGGGTGAGATGATTCGGGAGTGGCTTTTCTTTGATAAACCTCGCCGAGCATTTGAAAGTGGGAATAGGAAGCAGAGATCATTGCCTGATTACAGTGGACGTGGTTGGCACGAGTCAAGAAAGCAAGTGATGAATGAGTTTGGAGGGCTCAAGAGATCTTATTACATGGATCCTCAGCCATTGAACCACTTTGAGTGGCATCTTTATGAATATGAAATTAACAAGTATGATGCCTGTGCTTTGTATAGATTGGAGCTGAAACTTGTCGATGGGAAAAAAAGTTCTAAGGCAAAGGTAACAAATGATTCAGTTGCTGATTTACAGAGGCAGATGGGGAGACTAACTGCAGAGTTTCCTGATAATAAACGCTATGTGAAGGGGAGGACCAAAATTAATACTAGAGTTGGTGTTGGAAATATGTACCCCGCAGTAAATAGAGCCCTGCCACCAAATGGAACGTATGACTATATGCTTCATGCACAATATGATTACCTGGTGGAGAATTTGAGTGAATATTACCTGACATAG 1479 44.49 MGKHSKTSCKSASHKLFKDKAKNRVDDLQSIFVDLQYARKESRTVDVAVLEEQVHQMLREWKAELNEPSPASSLQQGGSLGSFSSDICRLLQLCEEDDDASSPLAAPKPEPNEQNLQVGDTTALQEVLHILNLLQGFHMNRVHQEPSFSLVDQCKNSPSGVHGMAMNNLEGPTHLECHQFDLHQGIEHNFYSFLNGRGLCGEGAISHVSSYCPSICPPPAAFLGPKCALWDCPRPAQGLDWCEDYCSSFHAALALNEGPPGMGPVLRPGGIGLKDGLLFAALSAKSQGKDVGIPECEGAATAKSPWNAPELFDLSILEGEMIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGGLKRSYYMDPQPLNHFEWHLYEYEINKYDACALYRLELKLVDGKKSSKAKVTNDSVADLQRQMGRLTAEFPDNKRYVKGRTKINTRVGVGNMYPAVNRALPPNGTYDYMLHAQYDYLVENLSEYYLT 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18986932 18990860 + MC01g1447 Mch1g1906 676798

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1906 492 PANTHER TRANSCRIPTION FACTOR VOZ1 1 490 IPR039277 GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0043565(PANTHER)|GO:0045893(PANTHER)|GO:0048578(InterPro)|GO:0048578(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1906 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1906 Mch-Chr1:18986932 Mch2g0512 Mch-Chr2:3654993 1.16E-174 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch1g1906 . 2 493 VOZ-9 Transcription Factor Family AT1G28520 68.9 1.9e-196 682.2
Mch2g0512 . 6 474 VOZ-9 Transcription Factor Family AT1G28520 54.2 1.4e-135 479.9
Mch2g0512 . 11 447 VOZ-9 Transcription Factor Family AT2G42400 50.2 4.8e-109 391.7
Mch1g1906 . 27 431 VOZ-9 Transcription Factor Family AT2G42400 51.2 6.0e-104 374.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004233 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42807 None None None None Mch TF