Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1928 ATGGAGAAATCATGGTCTTGGACCGCACAGAGGCTTTCCTCAGTCACAATCAGCTCGACCAGCTCTCGCCTTCGTTTCGCCCCCTCTTCTTTTGTGTCTACAAGCTTTGTAATGGAGGTTATAAAGGTGGTTCTATTGCTGTTCATCGTAATCTGGGTGGTCTCTGCCTCTGATAGTCATTTGTCTCCAAAAGGAGTTAACTATGAAGTGGCGGCTTTGATGTCAGTGAAGAGTAGGATAAGGGACGAGCGGAGAGTGATGGAGGGTTGGGACATAAATTCGGTTGATCCATGTACTTGGAATATGGTTGCTTGCTCTACTGAGGGCTTTGTGATTTCTCTTGAAATGCCCAATATGGGCTTATCTGGAACGCTTTCCCCCAGCATTGGGAATTTGAGTCACCTTCGGACAATGTTGTTGCAAAATAACGAGTTATCTGGTCCAATCCCAGATGATATAGGAGGACTGTCAGAACTTCAGACTCTTGACCTCTCTGGTAACCAGCTTGTTGGAGGCATACCAAGTTCTTTGGGGTTTCTTACTCATCTAAATTACTTGAAGCTTAGTAATAACAAATTTAGTGGACCGATACCAGAATCAGTTGCAAATATCTCGGGCCTTTCCTTCTTGGATTTATCGAATAATAATCTCAGTGGTCCAACTCCAAGAATACTTGCCAAAGAGTACAGTGTTGCAGGGAATAGTTTCCTTTGTGCATCTTCATCACCTAAAGTTTGTGGTGTAGTTTCAAAACCAGTTAATGAAACTGATTCGCCTCAGAAAGATAATAGCCATCGTCACTTGGTGCTTTCTATAGCTCTAATAGTCAGTTTCACATTTGTGGTTTCTGTTGTGTTACTTGTTGGCTGGGTGCATTGCTATAGATCTCATCTTGTCTTCACATCGTATGTGCAGCAAGACTATGAATTTGATATTGGTCATCTTAAAAGGTTTACATTCCGTGAACTACAAAAGGCAACATGTAATTTTAGTCCAAAAAACATTCTGGGACAGGGTGGTTTCGGAGTAGTTTATAAAGGTTATCTTCCAAATGGGACATATGTTGCGGTTAAAAGACTGAAAGATCCAAATTATACTGGAGAAGTGCAGTTTCAAACTGAAGTTGAGATGATTGGCTTAGCAGTACACCGAAACCTCTTGCGTTTGTATGGCTTTTGTATGATGCCAGATGAGAGGCTTCTTGTATATCCATATATGCCAAATGGGAGTGTTGCTGACCGCCTGAGAGGCCAAGAGAAGCCTTCATTGAATTGGAATCGAAGGTTGCGTATTGCCCTTGGGGCAGCACGTGGACTTCTATACTTGCACGAACAGTGTAACCCGAAAATAATTCACCGAGATGTGAAAGCTGCAAATATTCTTCTGGATGAAAGCTTTGAAGCTGTGGTTGGGGATTTCGGTCTCGCAAAGATGTTAGATAGGAGGGATTCACATGTTACTACTGCAGTTAGGGGCACGGTTGGACATATTGCCCCGGAATATCTTTCAACTGGACAATCTTCAGAAAAGACTGATGTTTTTGGATTTGGCATATTGGTTCTGGAGCTCTTAACAGGGCAAAAAGCATTAGATGCTGGCAATGGTCAGGTCCGAAAGGGAATGATCCTTGAATGGGTTAGAACTTTACATGAGGAGAAGAGGTTAGATGTGCTGGTGGACAGGGATCTAAAAGGATGTTTTGATGCAATGGAGCTGGAAAAAGCCGTGGAGTTGGCTCTGCAATGTACTCAGTCACATCCACAGCTCCGACCGAAGATGTCCGAGATCTTGAAAGTTCTAGAAGGTCTTGTTGGACAGTCGAGCCAAATGGAGGAATCACCAGGTGGAGCAAGTCTTTATGAGGATAGAGCTCACAGTTTCTCCAGAAATTACAGTGATATTCATGAGGAATCTTCATTTGTGGTTGAAGCCATGGAGCTTTCGGGACCTCGATGA 1956 43.2 MEKSWSWTAQRLSSVTISSTSSRLRFAPSSFVSTSFVMEVIKVVLLLFIVIWVVSASDSHLSPKGVNYEVAALMSVKSRIRDERRVMEGWDINSVDPCTWNMVACSTEGFVISLEMPNMGLSGTLSPSIGNLSHLRTMLLQNNELSGPIPDDIGGLSELQTLDLSGNQLVGGIPSSLGFLTHLNYLKLSNNKFSGPIPESVANISGLSFLDLSNNNLSGPTPRILAKEYSVAGNSFLCASSSPKVCGVVSKPVNETDSPQKDNSHRHLVLSIALIVSFTFVVSVVLLVGWVHCYRSHLVFTSYVQQDYEFDIGHLKRFTFRELQKATCNFSPKNILGQGGFGVVYKGYLPNGTYVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMMPDERLLVYPYMPNGSVADRLRGQEKPSLNWNRRLRIALGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKMLDRRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILVLELLTGQKALDAGNGQVRKGMILEWVRTLHEEKRLDVLVDRDLKGCFDAMELEKAVELALQCTQSHPQLRPKMSEILKVLEGLVGQSSQMEESPGGASLYEDRAHSFSRNYSDIHEESSFVVEAMELSGPR 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19132348 19137660 - MC01g1467 Mch1g1928 676820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1928 651 SUPERFAMILY Protein kinase-like (PK-like) 312 601 IPR011009 -
Mch1g1928 651 FunFam Somatic embryogenesis receptor-like kinase 1 406 615 - -
Mch1g1928 651 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 43 651 - -
Mch1g1928 651 Gene3D Phosphorylase Kinase; domain 1 300 405 - -
Mch1g1928 651 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g1928 651 FunFam Somatic embryogenesis receptor kinase 1 299 405 - -
Mch1g1928 651 FunFam Putative LRR receptor-like serine/threonine-protein kinase 66 248 - -
Mch1g1928 651 ProSiteProfiles Protein kinase domain profile. 330 604 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g1928 651 SMART serkin_6 330 600 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g1928 651 Pfam Leucine Rich Repeat 207 226 IPR001611 GO:0005515(InterPro)
Mch1g1928 651 Pfam Leucine Rich Repeat 134 156 IPR001611 GO:0005515(InterPro)
Mch1g1928 651 Pfam Leucine Rich Repeat 159 180 IPR001611 GO:0005515(InterPro)
Mch1g1928 651 Pfam Leucine Rich Repeat 182 203 IPR001611 GO:0005515(InterPro)
Mch1g1928 651 ProSitePatterns Protein kinases ATP-binding region signature. 336 358 IPR017441 GO:0005524(InterPro)
Mch1g1928 651 Pfam Leucine rich repeat N-terminal domain 67 106 IPR013210 -
Mch1g1928 651 Gene3D Ribonuclease Inhibitor 66 248 IPR032675 -
Mch1g1928 651 Pfam Protein kinase domain 333 598 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g1928 651 Gene3D Transferase(Phosphotransferase) domain 1 406 612 - -
Mch1g1928 651 SUPERFAMILY L domain-like 68 228 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1928 Mch-Chr1:19132348 Mch8g0035 Mch-Chr8:204411 1.04E-189 dispersed
Mch6g1502 Mch-Chr6:14749611 Mch1g1928 Mch-Chr1:19132348 4.99E-21 transposed
Mch1g1928 Mch-Chr1:19132348 Mch10g1082 Mch-Chr10:7953754 1.40E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77163 PF00069 Pkinase 1.90E-44 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1928 - - - 0.0