Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1930 ATGGCCGACCGGCCGGACCCCGACAAGAAGCCCGATTCCAACAAGAAGGATATGCCAGCTCTTCTTCTAGGCCGATACGAGATCGGCAAGCTCCTCGGCCATGGCACCTTCGCCAAGGTCTACCACGCCCGGAACATCAAAACCGACGAGAGCGTCGCCATTAAAGTCATCGACAAGGAGAAGATCCTCAAGGGCGGTCTAATCGCCCACATCAAGCGCGAGATCTCGATCCTCCGCCGCGTCCGCCACCCCAACATAGTCCAGCTCTTCGAGGTCATGGCCACCAAGGCCAAGATCTACTTCGTCATGGAGTACGTCCGCGGCGGCGAGCTCTTCAAGAAGGTCTCCAAGGGCCGCTTGAAGGAAGAGGTCGCCAGAAAATACTTTCAGCAATTAATCTCCGCCGTTGCCTTCTGTCACGCCCGCGGCGTTTACCATCGCGACCTTAAACCGGAGAATCTCTTACTCGACGAGAATGGGAATCTCAAGGTCTCCGATTTCGGCCTCAGCGCCGTCTCCGATCAAATTCGACAGGACGGTTTGTTCCACACTTTTTGCGGTACGCCCGCTTATGTCGCTCCGGAGGTTTTGGCCCGGAAGGGCTACGAGGCCGTGAAGGTCGATATATGGTCCTGCGGGGTTATTCTGTTCGTTCTTATGGCCGGTTATTTGCCCTTCCACGATCAGAACATTATGGCAATGTATAAGAAAATTTACAAGGGCGAGTTCCGGTGTCCCAGATGGTTCTCGCCGGAGCTAGTTCGACTCCTCTATCGGCTTTTGGACACAAATCCCGAAACCCGAATCACAATTCCTGAAATCATGGAGAATAGATGGTTCAAAAAGGGGTATAAGCACATCAAATTCTACATCGAAGACGATAAGGTGTGTAGCGTGCAGGAGGACAACGACGACATCGATTCCTTATCGGATCAATCGCAATCGGAATCCGATTCCGAAATTGAGTTTCGGAGAAAGACCGCTTCGCTCCCGAGACCGGCGAGTTTGAATGCGTTCGATATTATTTCGTTTTCGCCCGGATTTGATCTTTCCGGGTTGTTCGAGGACGGAGGGGAAGAGGCGAGATTTGTGTCCGGCGCTCCGGTGTCGAAGATTATATCTAAATTGGAGGAAATTGCGAAATTGGTGAGTTTCACTGTGAGGAAGAAGGATTGCAGGGTGAGTTTGGAGGGGTCGATGGAAGGTGTGAAAGGGCCATTGACGATCGCGGCGGAGATATTTGAATTGACGCCCAAATTGGTGATGGTGGAGGTGAAGAGGAAAGGGGGAGATAAAGCAGAGTATGAACACTTCTGTAATGTGGAATTGAAACCAGCACTACAGAATTTGAAGATGGAGGAGGACTCTGCTGCTGCTCCAGCTCCAGCTCCAGCTCCATCACATATACCTTCAGATACCGAATAA 1425 51.72 MADRPDPDKKPDSNKKDMPALLLGRYEIGKLLGHGTFAKVYHARNIKTDESVAIKVIDKEKILKGGLIAHIKREISILRRVRHPNIVQLFEVMATKAKIYFVMEYVRGGELFKKVSKGRLKEEVARKYFQQLISAVAFCHARGVYHRDLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYEAVKVDIWSCGVILFVLMAGYLPFHDQNIMAMYKKIYKGEFRCPRWFSPELVRLLYRLLDTNPETRITIPEIMENRWFKKGYKHIKFYIEDDKVCSVQEDNDDIDSLSDQSQSESDSEIEFRRKTASLPRPASLNAFDIISFSPGFDLSGLFEDGGEEARFVSGAPVSKIISKLEEIAKLVSFTVRKKDCRVSLEGSMEGVKGPLTIAAEIFELTPKLVMVEVKRKGGDKAEYEHFCNVELKPALQNLKMEEDSAAAPAPAPAPSHIPSDTE 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19151726 19154684 + MC01g_new0462 Mch1g1930 676822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1930 474 ProSiteProfiles Protein kinase domain profile. 26 280 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g1930 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g1930 474 FunFam Non-specific serine/threonine protein kinase 333 451 - -
Mch1g1930 474 FunFam Non-specific serine/threonine protein kinase 18 105 - -
Mch1g1930 474 Gene3D Transferase(Phosphotransferase) domain 1 17 333 - -
Mch1g1930 474 CDD STKc_SnRK3 25 279 - -
Mch1g1930 474 CDD CIPK_C 337 448 - -
Mch1g1930 474 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 13 441 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Mch1g1930 474 Gene3D Kinase associated domain 1, KA1 334 451 - -
Mch1g1930 474 SUPERFAMILY Protein kinase-like (PK-like) 22 327 IPR011009 -
Mch1g1930 474 MobiDBLite consensus disorder prediction 451 474 - -
Mch1g1930 474 Pfam NAF domain 333 389 IPR004041 GO:0007165(InterPro)
Mch1g1930 474 ProSitePatterns Protein kinases ATP-binding region signature. 32 55 IPR017441 GO:0005524(InterPro)
Mch1g1930 474 SMART serkin_6 26 280 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g1930 474 FunFam Non-specific serine/threonine protein kinase 16 328 - -
Mch1g1930 474 MobiDBLite consensus disorder prediction 304 325 - -
Mch1g1930 474 Pfam Protein kinase domain 26 280 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g1930 474 ProSiteProfiles NAF domain profile. 331 355 IPR018451 GO:0007165(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1930 Mch-Chr1:19151726 Mch8g2989 Mch-Chr8:32521646 1.01E-180 dispersed
Mch9g2066 Mch-Chr9:21755076 Mch1g1930 Mch-Chr1:19151726 3.65E-26 dispersed
Mch1g1930 Mch-Chr1:19151726 Mch3g1072 Mch-Chr3:14233192 9.84E-183 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77165 PF00069 Pkinase 6.20E-75 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1930 - - - 0.0