Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1938 ATGGCTGAGGTCCACAGCAGTAACCCGGGCCCGGGGGGAATTAAGCTCTTCGGCACGATGATCAGTTTACAGACCAGAAAATTAAAGGAGGAACCGCCGGAGAAAGGCGGCGCCGATCAAACGGAGGTGATGAAGAGGCCGGAAAAAATCATACCATGTCCGAGATGTAAGAGTATGGAGACCAAATTCTGTTACTTCAACAATTACAATGTTAATCAGCCAAGGCATTTCTGCAAGGGGTGCCAGAGGTACTGGACGGCCGGAGGGGCGCTCCGGAACGTGCCCATCGGAGCCGGCCGCCGGAGAACCAAGCCGCCCAATTGCCGCGCCCTCGGCGGCGAGGATTTCCAACTATATGACGACGCTTCCGGGATTATTCATCAGATCGAGTTGGATGCGATGGAGGGGTGGCATCTCACGGTGGCGCAAGAGGATCATTTACGGCGAGTTTTTCCGATGAAACGCCAGAAGATCGGTCGACAAGGTCAAACGTCT 495 54.75 MAEVHSSNPGPGGIKLFGTMISLQTRKLKEEPPEKGGADQTEVMKRPEKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRTKPPNCRALGGEDFQLYDDASGIIHQIELDAMEGWHLTVAQEDHLRRVFPMKRQKIGRQGQTS 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19214808 19215302 + MC01g1476 Mch1g1938 676830

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1938 165 ProSitePatterns Zinc finger Dof-type signature. 53 89 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch1g1938 165 ProSiteProfiles Zinc finger Dof-type profile. 51 105 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch1g1938 165 Pfam Dof domain, zinc finger 49 104 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch1g1938 165 PANTHER CYCLIC DOF FACTOR 2 29 110 IPR045174 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1938 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1938 Mch-Chr1:19214808 Mch3g1737 Mch-Chr3:18801554 5.90E-35 dispersed
Mch1g1938 Mch-Chr1:19214808 Mch3g1085 Mch-Chr3:14318720 5.84E-59 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch3g1085 . 12 169 C2C2-Dof Transcription Factor Family AT1G29160 54.1 1.6e-44 176.0
Mch1g1938 . 13 164 C2C2-Dof Transcription Factor Family AT1G29160 52.9 1.3e-41 166.4
Mch3g1085 . 12 169 C2C2-Dof Transcription Factor Family AT2G34140 53.4 2.5e-42 168.7
Mch1g1938 . 13 164 C2C2-Dof Transcription Factor Family AT2G34140 52.4 1.8e-40 162.5
Mch5g1836 . 67 141 C2C2-Dof Transcription Factor Family AT2G37590 90.7 5.5e-38 155.2
Mch4g2138 . 1 131 C2C2-Dof Transcription Factor Family AT2G37590 61.7 7.2e-38 154.8
Mch1g0729 . 1 135 C2C2-Dof Transcription Factor Family AT5G02460 66.2 7.9e-39 158.3
Mch4g2138 . 1 131 C2C2-Dof Transcription Factor Family AT5G02460 66.0 9.6e-37 151.4
Mch2g0909 . 1 124 C2C2-Dof Transcription Factor Family AT5G02460 55.8 1.6e-36 150.6
Mch9g1562 . 59 218 C2C2-Dof Transcription Factor Family AT3G55370 51.3 4.3e-39 159.1
Mch6g0313 . 28 327 C2C2-Dof Transcription Factor Family AT5G60850 51.6 8.7e-46 181.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005702 4 1 1 2 3 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42813 PF02701 zf-Dof 2.20E-31 No_clan Mch TF