Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1938 ATGGCTGAGGTCCACAGCAGTAACCCGGGCCCGGGGGGAATTAAGCTCTTCGGCACGATGATCAGTTTACAGACCAGAAAATTAAAGGAGGAACCGCCGGAGAAAGGCGGCGCCGATCAAACGGAGGTGATGAAGAGGCCGGAAAAAATCATACCATGTCCGAGATGTAAGAGTATGGAGACCAAATTCTGTTACTTCAACAATTACAATGTTAATCAGCCAAGGCATTTCTGCAAGGGGTGCCAGAGGTACTGGACGGCCGGAGGGGCGCTCCGGAACGTGCCCATCGGAGCCGGCCGCCGGAGAACCAAGCCGCCCAATTGCCGCGCCCTCGGCGGCGAGGATTTCCAACTATATGACGACGCTTCCGGGATTATTCATCAGATCGAGTTGGATGCGATGGAGGGGTGGCATCTCACGGTGGCGCAAGAGGATCATTTACGGCGAGTTTTTCCGATGAAACGCCAGAAGATCGGTCGACAAGGTCAAACGTCT 495 54.75 MAEVHSSNPGPGGIKLFGTMISLQTRKLKEEPPEKGGADQTEVMKRPEKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRTKPPNCRALGGEDFQLYDDASGIIHQIELDAMEGWHLTVAQEDHLRRVFPMKRQKIGRQGQTS 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19214808 19215302 + MC01g1476 Mch1g1938 676830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1938 165 ProSitePatterns Zinc finger Dof-type signature. 53 89 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch1g1938 165 ProSiteProfiles Zinc finger Dof-type profile. 51 105 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch1g1938 165 Pfam Dof domain, zinc finger 49 104 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch1g1938 165 PANTHER CYCLIC DOF FACTOR 2 29 110 IPR045174 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1938 Mch-Chr1:19214808 Mch3g1737 Mch-Chr3:18801554 5.90E-35 dispersed
Mch1g1938 Mch-Chr1:19214808 Mch3g1085 Mch-Chr3:14318720 5.84E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42813 PF02701 zf-Dof 2.20E-31 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1938 - - - 0.0