Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1957 ATGATGTCAAAATCGTATACTAATCTTTTAGATTTAGCTTCTGGGAATTTTCCCATCATGGGTCGTGAGAAAAAACGACTTCCACGAGTAATGACTGTTGCGGGGGTAATATCGGAGCTTGATGATGAGCAGGCAAATAGTGTGACTTCCGAAGGTCCTTCCTCAGTTGTGCAAGACCGTATAATTATTGTTGCCAATCAGCTTCCTATTAAAGCTAAGCGTAGACCAGACAATAAAGGCTGGAGTTTTAGTTGGGATGAAGACTCTTTGCTGTGGCAGCTAAAGGATGGTTTACCTGAAGATATGGAGATTTTGTATGTAGGATCTTTGCGGGTGGATGTTGATTCTACCGAACAAGATGATGTATCACAGCTTTTGTTGGAGAGGTTTAAGTGTGTTCCTGCGTTTTTACCTCATAACATTCTATCAAAATTTTACCATGGTTTTTGTAAGCAACATTTGTGGCCACTCTTTCATTATATGCTTCCATTCTCAGCTACTCATGGTGGTCGGTTTGATCGGTCTCTGTGGGAGGCATATGTAGCCGCAAATAAAATTTTTTCACAAAGGGTGATTGAGGTCATAAACCCAGATGACGACTTTGTATGGATTCATGATTACCATTTGATGGTGCTGCCTTCCTTCTTGAGGAGAAGGTTTACAAGATTGAGAATGGGCTTTTTTCTTCACAGTCCATTTCCTTCGTCAGAGATATATAGGACTCTGCCAGTGAGGGAAGAGATTCTTAAGGCACTTTTGAATTCAGACCTTATTGGTTTTCACACTTTTGACTATGCTCGACATTTCCTGTCTTGTTGTAGTCGGATGTTGGGTTTGGCATATCAGTCAAAGAGGGGTTATATTGGGTTGGAATATTATGGAAGGACCGTGGGGATAAAGATCATGCCTGTTGGAATTCACATGGGCCAGATGGAGTCAGTTTTAAGACTTGCTGATAAAGACTGGAGGGTGCAGGAGCTCAAGCGAGAGTTTGAAGGAAAAGTTGTCTTACTTGGGGTTGATGATATGGACATTTTTAAAGGGGTCAATCTGAAGTTGTTGGCAATGGAACAAATGCTAAGGCAACATCCAAAGTGGCAGGGAAGGGCCGTTTTGGTACAGATTGCAAATCCAGCTAGAGGAAGAGGGAAAGATCTTGAGGAAATACAAGATGAAATACAGGAATGCTGCAAGAGGATTAATGAAAGTTTTGGACAGTCAAATTATGAACCAATTGTGTTCATTGACCGGCCCGTTTCTCTCGCTGAAAGAGCTGCATATTACACGATTTCTGAATGTGTTGTAGTCACAGCAGTGAGGGATGGTATGAACCTAACTCCTTATGAGTACGTTGTCTGCAGGCAGGGAACTTCTGGATCAGATTATAGCTCTGAAACTAATGGACCACAAAAGAGCATGCTAGTCATATCAGAGTTCATGGGATGTTCCCCTTCTCTTAGTGGTGCAATACGGGTCAACCCATGGAACATCGAAGCAACTGCCGAAGCATTGAATGAGGCAATATCAATGGCTGATGCTGAGAAGCAATTACGCCATGAAAAGCATTACAAATATGTGAGTATACATGACGTGGCATACTGGTCAAGGAGTTTTTTCCAAGATATGGACAGAACTTGTAAGGATCACTTCAGAAGAAGGTGCTGGGGAATTGGATTGGGCTTTGGTTTCAGAGTTGTAGCACTTGATCCTAGTTTTAGAAAGTTGTCTATTGATGCCATTGTAGCTGCATATTCGAGGTCTAAAAGAAGGGCTATACTTTTGGATTATGATGGCACCGTGATGCCACAAACTTCAATTGATAAGACTCCAAGTAAACAAGTTATTTCAATCATTGATTCACTTTGTGATGATGTTAGGAATACTGTTTTTGTTGTCAGTGGAAGAGGGCGTGATAGTTTGGGCAGCTGGTTTTCTCCTTGTGAAAAACTTGGGATTGCTGCTGAGCATGGCTATTTTATGAGGTGGTCTGCTGATAAGGAGTGGGAACACTGTGGGCAAGGTAGTGATTTTGGTTGGATACAGATTGCAGAGCCAGTCATGAAACTATATACAGAAGCTACTGACGGCTCTTCTATTGAAACTAAGGAAAGCGCCTTGGTGTGGCACCATCAAGATGCGGACCCTGATTTTGGTTGCAGCCAGGCCAAGGAACTGTTGGATCACCTTGAAAGTGTGCTGGCAAATGAACCAGTTGCTGTTAAAAGTGGTCAGTTTATTGTAGAAGTGAAGCCACAGGGAGTCAGTAAAGGTTTGGTGGCTGAAAAGATCTTTGCGTCAATGGCGGATGCAGGAAGACGGGCTGATTTTGTGCTATGCATTGGTGACGATAGATCTGATGAAGACATGTTTGAGATCATTGGTAATGCTGTATCAAGTGGCGTCCTGTCTTCCAATACATTAGTTTTTGCATGCACAGTGGGACAGAAACCAAGCAAAGCCAAGTATTACTTGGATGACACAACTGAGGTCATAAACATGCTTGAAGCCCTTGCAGAAGTTTCAGATATTTCTTCCCCACCAGAATCCCCTTGA 2553 42.46 MMSKSYTNLLDLASGNFPIMGREKKRLPRVMTVAGVISELDDEQANSVTSEGPSSVVQDRIIIVANQLPIKAKRRPDNKGWSFSWDEDSLLWQLKDGLPEDMEILYVGSLRVDVDSTEQDDVSQLLLERFKCVPAFLPHNILSKFYHGFCKQHLWPLFHYMLPFSATHGGRFDRSLWEAYVAANKIFSQRVIEVINPDDDFVWIHDYHLMVLPSFLRRRFTRLRMGFFLHSPFPSSEIYRTLPVREEILKALLNSDLIGFHTFDYARHFLSCCSRMLGLAYQSKRGYIGLEYYGRTVGIKIMPVGIHMGQMESVLRLADKDWRVQELKREFEGKVVLLGVDDMDIFKGVNLKLLAMEQMLRQHPKWQGRAVLVQIANPARGRGKDLEEIQDEIQECCKRINESFGQSNYEPIVFIDRPVSLAERAAYYTISECVVVTAVRDGMNLTPYEYVVCRQGTSGSDYSSETNGPQKSMLVISEFMGCSPSLSGAIRVNPWNIEATAEALNEAISMADAEKQLRHEKHYKYVSIHDVAYWSRSFFQDMDRTCKDHFRRRCWGIGLGFGFRVVALDPSFRKLSIDAIVAAYSRSKRRAILLDYDGTVMPQTSIDKTPSKQVISIIDSLCDDVRNTVFVVSGRGRDSLGSWFSPCEKLGIAAEHGYFMRWSADKEWEHCGQGSDFGWIQIAEPVMKLYTEATDGSSIETKESALVWHHQDADPDFGCSQAKELLDHLESVLANEPVAVKSGQFIVEVKPQGVSKGLVAEKIFASMADAGRRADFVLCIGDDRSDEDMFEIIGNAVSSGVLSSNTLVFACTVGQKPSKAKYYLDDTTEVINMLEALAEVSDISSPPESP 850
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19307295 19312704 + MC01g1491 Mch1g1957 676849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1957 850 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 24 840 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Mch1g1957 850 Gene3D Glycogen Phosphorylase B; 321 528 - -
Mch1g1957 850 Gene3D - 719 845 IPR023214 -
Mch1g1957 850 Gene3D - 589 697 IPR023214 -
Mch1g1957 850 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 589 706 - -
Mch1g1957 850 SUPERFAMILY HAD-like 590 838 IPR036412 -
Mch1g1957 850 NCBIfam HAD-IIB family hydrolase 592 798 IPR006379 -
Mch1g1957 850 CDD GT20_TPS 60 542 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Mch1g1957 850 Pfam Glycosyltransferase family 20 60 543 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Mch1g1957 850 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 547 - -
Mch1g1957 850 Pfam Trehalose-phosphatase 593 827 IPR003337 GO:0005992(InterPro)
Mch1g1957 850 FunFam Alpha,alpha-trehalose-phosphate synthase 314 527 - -
Mch1g1957 850 NCBIfam trehalose-phosphatase 587 838 IPR003337 GO:0005992(InterPro)
Mch1g1957 850 Gene3D Glycogen Phosphorylase B; 50 320 - -
Mch1g1957 850 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 53 312 - -
Mch1g1957 850 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 719 849 - -
Mch1g1957 850 FunFam Trehalose-6-phosphate synthase 2 673 752 - -
Mch1g1957 850 CDD HAD_TPP 591 832 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1957 Mch-Chr1:19307295 Mch9g1356 Mch-Chr9:15890577 0 dispersed
Mch1g1957 Mch-Chr1:19307295 Mch4g0135 Mch-Chr4:891787 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1957 K16055 - csv:101213082 1670.21