Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1957 ATGATGTCAAAATCGTATACTAATCTTTTAGATTTAGCTTCTGGGAATTTTCCCATCATGGGTCGTGAGAAAAAACGACTTCCACGAGTAATGACTGTTGCGGGGGTAATATCGGAGCTTGATGATGAGCAGGCAAATAGTGTGACTTCCGAAGGTCCTTCCTCAGTTGTGCAAGACCGTATAATTATTGTTGCCAATCAGCTTCCTATTAAAGCTAAGCGTAGACCAGACAATAAAGGCTGGAGTTTTAGTTGGGATGAAGACTCTTTGCTGTGGCAGCTAAAGGATGGTTTACCTGAAGATATGGAGATTTTGTATGTAGGATCTTTGCGGGTGGATGTTGATTCTACCGAACAAGATGATGTATCACAGCTTTTGTTGGAGAGGTTTAAGTGTGTTCCTGCGTTTTTACCTCATAACATTCTATCAAAATTTTACCATGGTTTTTGTAAGCAACATTTGTGGCCACTCTTTCATTATATGCTTCCATTCTCAGCTACTCATGGTGGTCGGTTTGATCGGTCTCTGTGGGAGGCATATGTAGCCGCAAATAAAATTTTTTCACAAAGGGTGATTGAGGTCATAAACCCAGATGACGACTTTGTATGGATTCATGATTACCATTTGATGGTGCTGCCTTCCTTCTTGAGGAGAAGGTTTACAAGATTGAGAATGGGCTTTTTTCTTCACAGTCCATTTCCTTCGTCAGAGATATATAGGACTCTGCCAGTGAGGGAAGAGATTCTTAAGGCACTTTTGAATTCAGACCTTATTGGTTTTCACACTTTTGACTATGCTCGACATTTCCTGTCTTGTTGTAGTCGGATGTTGGGTTTGGCATATCAGTCAAAGAGGGGTTATATTGGGTTGGAATATTATGGAAGGACCGTGGGGATAAAGATCATGCCTGTTGGAATTCACATGGGCCAGATGGAGTCAGTTTTAAGACTTGCTGATAAAGACTGGAGGGTGCAGGAGCTCAAGCGAGAGTTTGAAGGAAAAGTTGTCTTACTTGGGGTTGATGATATGGACATTTTTAAAGGGGTCAATCTGAAGTTGTTGGCAATGGAACAAATGCTAAGGCAACATCCAAAGTGGCAGGGAAGGGCCGTTTTGGTACAGATTGCAAATCCAGCTAGAGGAAGAGGGAAAGATCTTGAGGAAATACAAGATGAAATACAGGAATGCTGCAAGAGGATTAATGAAAGTTTTGGACAGTCAAATTATGAACCAATTGTGTTCATTGACCGGCCCGTTTCTCTCGCTGAAAGAGCTGCATATTACACGATTTCTGAATGTGTTGTAGTCACAGCAGTGAGGGATGGTATGAACCTAACTCCTTATGAGTACGTTGTCTGCAGGCAGGGAACTTCTGGATCAGATTATAGCTCTGAAACTAATGGACCACAAAAGAGCATGCTAGTCATATCAGAGTTCATGGGATGTTCCCCTTCTCTTAGTGGTGCAATACGGGTCAACCCATGGAACATCGAAGCAACTGCCGAAGCATTGAATGAGGCAATATCAATGGCTGATGCTGAGAAGCAATTACGCCATGAAAAGCATTACAAATATGTGAGTATACATGACGTGGCATACTGGTCAAGGAGTTTTTTCCAAGATATGGACAGAACTTGTAAGGATCACTTCAGAAGAAGGTGCTGGGGAATTGGATTGGGCTTTGGTTTCAGAGTTGTAGCACTTGATCCTAGTTTTAGAAAGTTGTCTATTGATGCCATTGTAGCTGCATATTCGAGGTCTAAAAGAAGGGCTATACTTTTGGATTATGATGGCACCGTGATGCCACAAACTTCAATTGATAAGACTCCAAGTAAACAAGTTATTTCAATCATTGATTCACTTTGTGATGATGTTAGGAATACTGTTTTTGTTGTCAGTGGAAGAGGGCGTGATAGTTTGGGCAGCTGGTTTTCTCCTTGTGAAAAACTTGGGATTGCTGCTGAGCATGGCTATTTTATGAGGTGGTCTGCTGATAAGGAGTGGGAACACTGTGGGCAAGGTAGTGATTTTGGTTGGATACAGATTGCAGAGCCAGTCATGAAACTATATACAGAAGCTACTGACGGCTCTTCTATTGAAACTAAGGAAAGCGCCTTGGTGTGGCACCATCAAGATGCGGACCCTGATTTTGGTTGCAGCCAGGCCAAGGAACTGTTGGATCACCTTGAAAGTGTGCTGGCAAATGAACCAGTTGCTGTTAAAAGTGGTCAGTTTATTGTAGAAGTGAAGCCACAGGGAGTCAGTAAAGGTTTGGTGGCTGAAAAGATCTTTGCGTCAATGGCGGATGCAGGAAGACGGGCTGATTTTGTGCTATGCATTGGTGACGATAGATCTGATGAAGACATGTTTGAGATCATTGGTAATGCTGTATCAAGTGGCGTCCTGTCTTCCAATACATTAGTTTTTGCATGCACAGTGGGACAGAAACCAAGCAAAGCCAAGTATTACTTGGATGACACAACTGAGGTCATAAACATGCTTGAAGCCCTTGCAGAAGTTTCAGATATTTCTTCCCCACCAGAATCCCCTTGA 2553 42.46 MMSKSYTNLLDLASGNFPIMGREKKRLPRVMTVAGVISELDDEQANSVTSEGPSSVVQDRIIIVANQLPIKAKRRPDNKGWSFSWDEDSLLWQLKDGLPEDMEILYVGSLRVDVDSTEQDDVSQLLLERFKCVPAFLPHNILSKFYHGFCKQHLWPLFHYMLPFSATHGGRFDRSLWEAYVAANKIFSQRVIEVINPDDDFVWIHDYHLMVLPSFLRRRFTRLRMGFFLHSPFPSSEIYRTLPVREEILKALLNSDLIGFHTFDYARHFLSCCSRMLGLAYQSKRGYIGLEYYGRTVGIKIMPVGIHMGQMESVLRLADKDWRVQELKREFEGKVVLLGVDDMDIFKGVNLKLLAMEQMLRQHPKWQGRAVLVQIANPARGRGKDLEEIQDEIQECCKRINESFGQSNYEPIVFIDRPVSLAERAAYYTISECVVVTAVRDGMNLTPYEYVVCRQGTSGSDYSSETNGPQKSMLVISEFMGCSPSLSGAIRVNPWNIEATAEALNEAISMADAEKQLRHEKHYKYVSIHDVAYWSRSFFQDMDRTCKDHFRRRCWGIGLGFGFRVVALDPSFRKLSIDAIVAAYSRSKRRAILLDYDGTVMPQTSIDKTPSKQVISIIDSLCDDVRNTVFVVSGRGRDSLGSWFSPCEKLGIAAEHGYFMRWSADKEWEHCGQGSDFGWIQIAEPVMKLYTEATDGSSIETKESALVWHHQDADPDFGCSQAKELLDHLESVLANEPVAVKSGQFIVEVKPQGVSKGLVAEKIFASMADAGRRADFVLCIGDDRSDEDMFEIIGNAVSSGVLSSNTLVFACTVGQKPSKAKYYLDDTTEVINMLEALAEVSDISSPPESP 850
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19307295 19312704 + MC01g1491 Mch1g1957 676849

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1957 850 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 24 840 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Mch1g1957 850 Gene3D Glycogen Phosphorylase B; 321 528 - -
Mch1g1957 850 Gene3D - 719 845 IPR023214 -
Mch1g1957 850 Gene3D - 589 697 IPR023214 -
Mch1g1957 850 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 589 706 - -
Mch1g1957 850 SUPERFAMILY HAD-like 590 838 IPR036412 -
Mch1g1957 850 NCBIfam HAD-IIB family hydrolase 592 798 IPR006379 -
Mch1g1957 850 CDD GT20_TPS 60 542 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Mch1g1957 850 Pfam Glycosyltransferase family 20 60 543 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Mch1g1957 850 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 547 - -
Mch1g1957 850 Pfam Trehalose-phosphatase 593 827 IPR003337 GO:0005992(InterPro)
Mch1g1957 850 FunFam Alpha,alpha-trehalose-phosphate synthase 314 527 - -
Mch1g1957 850 NCBIfam trehalose-phosphatase 587 838 IPR003337 GO:0005992(InterPro)
Mch1g1957 850 Gene3D Glycogen Phosphorylase B; 50 320 - -
Mch1g1957 850 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 53 312 - -
Mch1g1957 850 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 719 849 - -
Mch1g1957 850 FunFam Trehalose-6-phosphate synthase 2 673 752 - -
Mch1g1957 850 CDD HAD_TPP 591 832 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1957 K16055 - - csv:101213082 1670.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1957 Mch-Chr1:19307295 Mch9g1356 Mch-Chr9:15890577 0 dispersed
Mch1g1957 Mch-Chr1:19307295 Mch4g0135 Mch-Chr4:891787 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch6g1953 . 21 573 Trehalose Biosynthesis Gene Families AT4G24040 57.5 1.1e-193 673.3
Mch6g1952 . 42 594 Trehalose Biosynthesis Gene Families AT4G24040 57.3 2.6e-190 662.1
Mch4g0135 . 1 841 Trehalose Biosynthesis Gene Families AT1G06410 78.0 0.0e+00 1374.0
Mch1g1957 . 1 845 Trehalose Biosynthesis Gene Families AT1G06410 75.6 0.0e+00 1349.7
Mch10g1678 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.3 0.0e+00 1147.1
Mch9g1356 . 1 848 Trehalose Biosynthesis Gene Families AT1G06410 64.0 0.0e+00 1136.7
Mch9g2224 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.6 0.0e+00 1097.8
Mch6g0163 . 1 852 Trehalose Biosynthesis Gene Families AT1G06410 59.9 2.2e-304 1041.6
Mch2g0654 . 1 771 Trehalose Biosynthesis Gene Families AT1G06410 53.6 4.7e-251 864.4
Mch11g0982 . 87 698 Trehalose Biosynthesis Gene Families AT1G16980 65.3 3.6e-246 847.8
Mch3g1040 . 78 695 Trehalose Biosynthesis Gene Families AT1G16980 63.5 7.7e-241 830.1
Mch9g2224 . 1 861 Trehalose Biosynthesis Gene Families AT1G23870 74.9 0.0e+00 1354.3
Mch6g0163 . 1 856 Trehalose Biosynthesis Gene Families AT1G23870 67.1 0.0e+00 1221.5
Mch9g1356 . 1 859 Trehalose Biosynthesis Gene Families AT1G23870 61.8 0.0e+00 1126.3
Mch10g1678 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.6 0.0e+00 1109.0
Mch1g1957 . 1 846 Trehalose Biosynthesis Gene Families AT1G23870 61.2 0.0e+00 1104.4
Mch4g0135 . 1 842 Trehalose Biosynthesis Gene Families AT1G23870 61.1 0.0e+00 1098.2
Mch9g2224 . 1 861 Trehalose Biosynthesis Gene Families AT1G60140 73.7 0.0e+00 1341.6
Mch6g0163 . 1 856 Trehalose Biosynthesis Gene Families AT1G60140 67.4 0.0e+00 1209.5
Mch9g1356 . 1 856 Trehalose Biosynthesis Gene Families AT1G60140 61.3 0.0e+00 1085.9
Mch10g1678 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 60.4 0.0e+00 1084.7
Mch4g0135 . 1 845 Trehalose Biosynthesis Gene Families AT1G60140 60.8 0.0e+00 1079.3
Mch1g1957 . 1 850 Trehalose Biosynthesis Gene Families AT1G60140 59.9 3.8e-314 1073.5
Mch9g1356 . 1 853 Trehalose Biosynthesis Gene Families AT1G68020 78.8 0.0e+00 1411.0
Mch10g1678 . 1 845 Trehalose Biosynthesis Gene Families AT1G68020 71.2 0.0e+00 1261.1
Mch1g1957 . 1 846 Trehalose Biosynthesis Gene Families AT1G68020 64.0 0.0e+00 1160.2
Mch4g0135 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 63.2 0.0e+00 1140.9
Mch9g2224 . 1 839 Trehalose Biosynthesis Gene Families AT1G68020 64.3 0.0e+00 1122.1
Mch6g0163 . 1 839 Trehalose Biosynthesis Gene Families AT1G68020 61.4 0.0e+00 1075.8
Mch9g2224 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.9 0.0e+00 1206.4
Mch6g0163 . 1 856 Trehalose Biosynthesis Gene Families AT1G70290 63.6 0.0e+00 1110.9
Mch9g1356 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 57.4 2.6e-294 1008.1
Mch4g0135 . 1 847 Trehalose Biosynthesis Gene Families AT1G70290 58.4 7.4e-294 1006.5
Mch1g1957 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 57.0 7.0e-292 1000.0
Mch10g1678 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.7 8.2e-285 976.5
Mch11g0982 . 1 947 Trehalose Biosynthesis Gene Families AT1G78580 77.8 0.0e+00 1481.8
Mch3g1040 . 1 932 Trehalose Biosynthesis Gene Families AT1G78580 73.6 0.0e+00 1373.2
Mch9g2224 . 33 842 Trehalose Biosynthesis Gene Families AT2G18700 61.7 1.0e-309 1059.3
Mch6g0163 . 11 838 Trehalose Biosynthesis Gene Families AT2G18700 59.9 1.4e-298 1022.3
Mch10g1678 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.5 5.2e-298 1020.4
Mch1g1957 . 1 842 Trehalose Biosynthesis Gene Families AT2G18700 58.8 9.9e-297 1016.1
Mch4g0135 . 24 841 Trehalose Biosynthesis Gene Families AT2G18700 58.5 2.5e-292 1001.5
Mch9g1356 . 1 848 Trehalose Biosynthesis Gene Families AT2G18700 57.1 3.8e-288 987.6
Mch10g1678 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.8 0.0e+00 1380.9
Mch9g1356 . 1 846 Trehalose Biosynthesis Gene Families AT4G17770 70.7 0.0e+00 1257.7
Mch1g1957 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 66.2 0.0e+00 1174.1
Mch4g0135 . 1 849 Trehalose Biosynthesis Gene Families AT4G17770 63.1 0.0e+00 1157.5
Mch9g2224 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 64.8 0.0e+00 1151.7
Mch6g0163 . 1 834 Trehalose Biosynthesis Gene Families AT4G17770 62.8 0.0e+00 1104.4
Mch11g0982 . 95 945 Trehalose Biosynthesis Gene Families AT4G27550 61.3 9.3e-302 1032.7
Mch3g1040 . 91 926 Trehalose Biosynthesis Gene Families AT4G27550 59.4 9.0e-289 989.6
Mch11g0982 . 1 947 Trehalose Biosynthesis Gene Families AT1G78580 77.8 0.0e+00 1481.8
Mch3g1040 . 1 932 Trehalose Biosynthesis Gene Families AT1G78580 73.6 0.0e+00 1373.2
Mch11g0982 . 87 698 Trehalose Biosynthesis Gene Families AT1G16980 65.3 3.6e-246 847.8
Mch3g1040 . 78 695 Trehalose Biosynthesis Gene Families AT1G16980 63.5 7.7e-241 830.1
Mch11g0982 . 85 623 Trehalose Biosynthesis Gene Families AT1G17000 62.0 2.9e-194 675.6
Mch3g1040 . 92 610 Trehalose Biosynthesis Gene Families AT1G17000 60.5 3.1e-188 655.6
Mch11g0982 . 95 945 Trehalose Biosynthesis Gene Families AT4G27550 61.3 9.3e-302 1032.7
Mch3g1040 . 91 926 Trehalose Biosynthesis Gene Families AT4G27550 59.4 9.0e-289 989.6
Mch10g1678 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.8 0.0e+00 1380.9
Mch9g1356 . 1 846 Trehalose Biosynthesis Gene Families AT4G17770 70.7 0.0e+00 1257.7
Mch1g1957 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 66.2 0.0e+00 1174.1
Mch4g0135 . 1 849 Trehalose Biosynthesis Gene Families AT4G17770 63.1 0.0e+00 1157.5
Mch9g2224 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 64.8 0.0e+00 1151.7
Mch6g0163 . 1 834 Trehalose Biosynthesis Gene Families AT4G17770 62.8 0.0e+00 1104.4
Mch9g1356 . 1 853 Trehalose Biosynthesis Gene Families AT1G68020 78.8 0.0e+00 1411.0
Mch10g1678 . 1 845 Trehalose Biosynthesis Gene Families AT1G68020 71.2 0.0e+00 1261.1
Mch1g1957 . 1 846 Trehalose Biosynthesis Gene Families AT1G68020 64.0 0.0e+00 1160.2
Mch4g0135 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 63.2 0.0e+00 1140.9
Mch9g2224 . 1 839 Trehalose Biosynthesis Gene Families AT1G68020 64.3 0.0e+00 1122.1
Mch6g0163 . 1 839 Trehalose Biosynthesis Gene Families AT1G68020 61.4 0.0e+00 1075.8
Mch4g0135 . 1 841 Trehalose Biosynthesis Gene Families AT1G06410 78.0 0.0e+00 1374.0
Mch1g1957 . 1 845 Trehalose Biosynthesis Gene Families AT1G06410 75.6 0.0e+00 1349.7
Mch10g1678 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.3 0.0e+00 1147.1
Mch9g1356 . 1 848 Trehalose Biosynthesis Gene Families AT1G06410 64.0 0.0e+00 1136.7
Mch9g2224 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.6 0.0e+00 1097.8
Mch6g0163 . 1 852 Trehalose Biosynthesis Gene Families AT1G06410 59.9 2.2e-304 1041.6
Mch2g0654 . 1 771 Trehalose Biosynthesis Gene Families AT1G06410 53.6 4.7e-251 864.4
Mch9g2224 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.9 0.0e+00 1206.4
Mch6g0163 . 1 856 Trehalose Biosynthesis Gene Families AT1G70290 63.6 0.0e+00 1110.9
Mch9g1356 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 57.4 2.6e-294 1008.1
Mch4g0135 . 1 847 Trehalose Biosynthesis Gene Families AT1G70290 58.4 7.4e-294 1006.5
Mch1g1957 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 57.0 7.0e-292 1000.0
Mch10g1678 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.7 8.2e-285 976.5
Mch9g2224 . 1 861 Trehalose Biosynthesis Gene Families AT1G23870 74.9 0.0e+00 1354.3
Mch6g0163 . 1 856 Trehalose Biosynthesis Gene Families AT1G23870 67.1 0.0e+00 1221.5
Mch9g1356 . 1 859 Trehalose Biosynthesis Gene Families AT1G23870 61.8 0.0e+00 1126.3
Mch10g1678 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.6 0.0e+00 1109.0
Mch1g1957 . 1 846 Trehalose Biosynthesis Gene Families AT1G23870 61.2 0.0e+00 1104.4
Mch4g0135 . 1 842 Trehalose Biosynthesis Gene Families AT1G23870 61.1 0.0e+00 1098.2
Mch9g2224 . 1 861 Trehalose Biosynthesis Gene Families AT1G60140 73.7 0.0e+00 1341.6
Mch6g0163 . 1 856 Trehalose Biosynthesis Gene Families AT1G60140 67.4 0.0e+00 1209.5
Mch9g1356 . 1 856 Trehalose Biosynthesis Gene Families AT1G60140 61.3 0.0e+00 1085.9
Mch10g1678 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 60.4 0.0e+00 1084.7
Mch4g0135 . 1 845 Trehalose Biosynthesis Gene Families AT1G60140 60.8 0.0e+00 1079.3
Mch1g1957 . 1 850 Trehalose Biosynthesis Gene Families AT1G60140 59.9 3.8e-314 1073.5
Mch9g2224 . 33 842 Trehalose Biosynthesis Gene Families AT2G18700 61.7 1.0e-309 1059.3
Mch6g0163 . 11 838 Trehalose Biosynthesis Gene Families AT2G18700 59.9 1.4e-298 1022.3
Mch10g1678 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.5 5.2e-298 1020.4
Mch1g1957 . 1 842 Trehalose Biosynthesis Gene Families AT2G18700 58.8 9.9e-297 1016.1
Mch4g0135 . 24 841 Trehalose Biosynthesis Gene Families AT2G18700 58.5 2.5e-292 1001.5
Mch9g1356 . 1 848 Trehalose Biosynthesis Gene Families AT2G18700 57.1 3.8e-288 987.6
Mch6g1953 . 21 573 Trehalose Biosynthesis Gene Families AT4G24040 57.5 1.1e-193 673.3
Mch6g1952 . 42 594 Trehalose Biosynthesis Gene Families AT4G24040 57.3 2.6e-190 662.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001233 1 5 3 3 2 2 0 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 3 2 3 3 73