Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1967 ATGGCTGAGATTTCAGGATCAAGCAATGGACACCACGCTGTTTCTTTGAACATCAAGGATGATTCCACAGCCGTGACCAACGCAGAATCAGCCGATTGCATATCTGTTCCTTTCATTCAGAAGTTGATTGCAGAAGTGGTAGGCACATATTTCTTGATATTTGCCGGCGGGGCATCAGTGGTGGTGAATTTGAGCAAAAATGGAGTCATCACTTTCCCAGGGATTTCAATCACGTGGGGTTTGGTTGTAATGGTGATGGTGTATTCCGTTGGCCACATCTCCGGTGCCCATTTCAATCCTGCTGTCACCATAGCCTTCGCCATCACCAAGAGATTTCCATGGAAACAGGTGCCAGCGTATGTGGTAGCACAAGTTCTTGGATCAACACTAGCAAGTGGGACACTGAGGCTAATATTTAATGGAACACAAGACCACTTTTCAGGGACTCTCCCAAGTGACTCATATCTTCAGACCTTTGTGGTTGAATTCATAATCACATTTTACCTCATGTTCGTGGTGTCTGGTGTTGCCACTGACAATAGAGCCATCGGTGAGCTTGCTGGACTTGCCGTCGGCGCCACAGTGCTTCTCAACGTCATGTTTGCAGGGCCAATTACAGGAGCATCAATGAATCCAGCGAGAAGTTTGGGGCCAGCTTTGGTGTCAAAACAGTTCAAAGGGTTGTGGATATACATGGTAGCTCCAATTTTAGGAGCAATTTCAGGTGCTTTGGTGTACAATACCATCAGATTTACAGACAAGCCTCTACGAGAGATCACTAAAAGTGCCTCTTTTCTCAAAGGACAGGGTCGTAGCGCCTCACCTTGA 828 46.62 MAEISGSSNGHHAVSLNIKDDSTAVTNAESADCISVPFIQKLIAEVVGTYFLIFAGGASVVVNLSKNGVITFPGISITWGLVVMVMVYSVGHISGAHFNPAVTIAFAITKRFPWKQVPAYVVAQVLGSTLASGTLRLIFNGTQDHFSGTLPSDSYLQTFVVEFIITFYLMFVVSGVATDNRAIGELAGLAVGATVLLNVMFAGPITGASMNPARSLGPALVSKQFKGLWIYMVAPILGAISGALVYNTIRFTDKPLREITKSASFLKGQGRSASP 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19361161 19363141 + MC01g1499 Mch1g1967 676859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1967 275 CDD MIP 40 249 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g1967 275 Pfam Major intrinsic protein 35 246 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g1967 275 Gene3D Glycerol uptake facilitator protein. 8 261 IPR023271 -
Mch1g1967 275 ProSitePatterns MIP family signature. 97 105 IPR022357 -
Mch1g1967 275 PRINTS Major intrinsic protein family signature 192 214 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g1967 275 PRINTS Major intrinsic protein family signature 161 179 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g1967 275 PRINTS Major intrinsic protein family signature 116 135 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g1967 275 PRINTS Major intrinsic protein family signature 229 249 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g1967 275 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g1967 275 PRINTS Major intrinsic protein family signature 79 103 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g1967 275 PANTHER AQUAPORIN NIP2-1 27 254 IPR034294 -
Mch1g1967 275 SUPERFAMILY Aquaporin-like 34 260 IPR023271 -
Mch1g1967 275 NCBIfam MIP family channel protein 44 246 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1967 Mch-Chr1:19361161 Mch8g2271 Mch-Chr8:25844295 4.60E-89 dispersed
Mch1g1967 Mch-Chr1:19361161 Mch1g1968 Mch-Chr1:19364976 2.56E-146 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1967 K09874 - csv:101219297 469.544