Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1968 TTGATTGCAGAGGTGGTGGGGACATATTTCTTGATATTTGCAGGGGAAGCATCAGTAGTGGTGAATTTGAGCACAGATGGAATTATCACCTTCCCAGGGATTTCTATTGCTTGGGGTTTAGTTGTAATGGTGATGGTGTATTCCGTTGGCCACATCTCTGGTGCCCATTTTAACCCCTCTGTCACCATAGCCTTTGCCATTACCAAGAGATTTCCATGGAAGGAGGTGCCTGCATTTGTGGTGGCTCAAGTTCTTGGATCAACATTAGCAAGTGGGACACTTAGGCTAATATTTAGTGGAAAACAAGACCACTTTGCAGGGACTCTCCCAAGTGACTCGTATTTGCAGACCTTTGTGATTGAATTCATTATCACATTTTACCTCATGTTTGTGGTGTCTGGTGTTGCCACTGACAATAGAGCCATCGGCGAACTTGCTGGACTTGCTGTCGGTGCTACCGTGCTGCTCAACGTGATGTTTGCAGGGCCAATTACTGGAGCATCCATGAATCCAGCCAGAAGCTTGGGACCTGCTATAGTATGGAAACAATTTAAAGGGCTATGGATTTACATGATAGCGCCTGTTTTAGGGGCGATTTCGGGTGCTTTGGTCTATAATACCATTAGGTTCACAGACAAGCCTCTAGGAGAGATCACCAAAAGTGCTTCCTTTCTCAGAAGT 681 45.52 LIAEVVGTYFLIFAGEASVVVNLSTDGIITFPGISIAWGLVVMVMVYSVGHISGAHFNPSVTIAFAITKRFPWKEVPAFVVAQVLGSTLASGTLRLIFSGKQDHFAGTLPSDSYLQTFVIEFIITFYLMFVVSGVATDNRAIGELAGLAVGATVLLNVMFAGPITGASMNPARSLGPAIVWKQFKGLWIYMIAPVLGAISGALVYNTIRFTDKPLGEITKSASFLRS 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19364976 19366132 + MC01g1500 Mch1g1968 676860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1968 227 Gene3D Glycerol uptake facilitator protein. 1 217 IPR023271 -
Mch1g1968 227 ProSitePatterns MIP family signature. 56 64 IPR022357 -
Mch1g1968 227 PRINTS Major intrinsic protein family signature 120 138 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g1968 227 PRINTS Major intrinsic protein family signature 151 173 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g1968 227 PRINTS Major intrinsic protein family signature 75 94 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g1968 227 PRINTS Major intrinsic protein family signature 188 208 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g1968 227 PRINTS Major intrinsic protein family signature 38 62 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g1968 227 Pfam Major intrinsic protein 2 205 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g1968 227 NCBIfam MIP family channel protein 3 205 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g1968 227 SUPERFAMILY Aquaporin-like 1 215 IPR023271 -
Mch1g1968 227 CDD MIP 2 208 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch1g1968 227 PANTHER AQUAPORIN NIP2-1 1 213 IPR034294 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1968 Mch-Chr1:19364976 Mch8g2271 Mch-Chr8:25844295 5.01E-83 dispersed
Mch1g1967 Mch-Chr1:19361161 Mch1g1968 Mch-Chr1:19364976 2.56E-146 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1968 K09874 - csv:101219297 390.193