Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1975 ATGAAGAGTCCGGTGAGGTATAAGTTGGGTAAACAGTCGTCCCTGGCGCCGGATGGCCACCTTGATGATTTGGTGGAGCTCGTCAAGGAGCACGAAACTGAGGAGGGGATAGATCCGAGGGTGAGGCTGATGTATTTAGCCAATGAGGGCGATTTGGAAGGAATTAAGGAACTGTTGGATTCGGGAGTTGATGTTAATTTCCATTATATCGATGACCGGACGGCTCTGCATATTGCTGCTTGCCAGGGATTCGCCGACGTTGTTGCTTTGTTGCTGGAGCGTGGCGCTGAAGTTGACTCCAAGGATCGCTGGGGGAGCACGCCTCTTAGGGATGCTGTACATTACAAAAACCACGATGTGATCAAACTTTTGGAGAAGCATGGTGCAGAGCCTCTGGTGGCCCCCATGCTCGTCAAGAATGCCCGTGAAGTGCCAGATTATGAAATTGATCCCGAGGAACTTGATTTTACCAACAGTGTGAACATTTCCAAGGGAACATTCCGAGTAGCATCTTGGCGTGGAACTGAGGTAGCTGTGAAAGAGCTTGGAGAAGACCTGTTCACTGATGAGGATAAAGTGAGGGCTTTCAGGGATGAACTTGCATTGCTTCAGAAAATACGACACCCCAATGTTGTCCAGTTTCTAGGTGCTGTTACTCAAAGTTGCCCGATGATGATCGTCACAGAATATTTGCCTAAGGGAGATCTTGGAGCATTATTGAAAAGAAAAGGAGCAATAAAAACAGTGACTGTTGTGAGACTTGCCCTTGATATTGCAAGGGGGATGAATTATTTACACGAGAACAAGCCGGCACCAATTATTCATCGTGATCTTGAGCCTTCAAATATTCTGAGGGATGATTCTGACCACCTGAAAGTAGCAGATTTTGGAGTAAGCAAATTATTGACAGTTAAAGAAGATAGACCTTCGGCTTGTTCAGAGACTTCTCGAAGGTATGAGGCTCCGGAGGTTTTCAAAAATGAAAAGTATGATACCAAGGTGGACGTATTTTCATTTGCTTTGATTCTACAAGAGATGATTGAAGGTCGTCCTCCATTTGCTGACACGCCAGATAGTGAAGTTCCTAAATTGTATGCAGCAGGAGAACGTCCACCATTTAGAGCACCACTTAAACGTTATGAAAATGGACTCAAAGAGCTAATTGAAGAATGCTGGAATGAGATGCCAGCTATGAGACCAACATTTAGGCAGATAATATCACAGCTGGAATTCATTTACAACAGATTCGGTCATAAGAGGCGCTGGAAGGTCAGGCCATTGAAATGCTTCCAAAATATTGAGGCCATGTTGAAGAAAGATCGTTCCCGTCGAAGCAGTTTCAGTCTATCAACACATTCTTCTGCCAGTAGTATATAA 1377 44.88 MKSPVRYKLGKQSSLAPDGHLDDLVELVKEHETEEGIDPRVRLMYLANEGDLEGIKELLDSGVDVNFHYIDDRTALHIAACQGFADVVALLLERGAEVDSKDRWGSTPLRDAVHYKNHDVIKLLEKHGAEPLVAPMLVKNAREVPDYEIDPEELDFTNSVNISKGTFRVASWRGTEVAVKELGEDLFTDEDKVRAFRDELALLQKIRHPNVVQFLGAVTQSCPMMIVTEYLPKGDLGALLKRKGAIKTVTVVRLALDIARGMNYLHENKPAPIIHRDLEPSNILRDDSDHLKVADFGVSKLLTVKEDRPSACSETSRRYEAPEVFKNEKYDTKVDVFSFALILQEMIEGRPPFADTPDSEVPKLYAAGERPPFRAPLKRYENGLKELIEECWNEMPAMRPTFRQIISQLEFIYNRFGHKRRWKVRPLKCFQNIEAMLKKDRSRRSSFSLSTHSSASSI 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19388249 19396081 + MC01g1506 Mch1g1975 676867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1975 458 FunFam Os01g0748600 protein 142 429 - -
Mch1g1975 458 CDD STKc_MAP3K-like 162 409 - -
Mch1g1975 458 ProSiteProfiles Ankyrin repeat region circular profile. 71 103 - -
Mch1g1975 458 Gene3D - 19 143 IPR036770 -
Mch1g1975 458 SMART ANK_2a 104 133 IPR002110 GO:0005515(InterPro)
Mch1g1975 458 SMART ANK_2a 38 67 IPR002110 GO:0005515(InterPro)
Mch1g1975 458 SMART ANK_2a 71 100 IPR002110 GO:0005515(InterPro)
Mch1g1975 458 SUPERFAMILY Ankyrin repeat 42 131 IPR036770 -
Mch1g1975 458 Gene3D Transferase(Phosphotransferase) domain 1 232 455 - -
Mch1g1975 458 PIRSF ILK 2 432 - -
Mch1g1975 458 ProSiteProfiles Protein kinase domain profile. 121 412 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g1975 458 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 64 410 IPR051681 GO:0004674(PANTHER)
Mch1g1975 458 Gene3D Phosphorylase Kinase; domain 1 148 231 - -
Mch1g1975 458 FunFam Integrin-linked protein kinase family 23 147 - -
Mch1g1975 458 ProSiteProfiles Ankyrin repeat profile. 71 103 IPR002110 GO:0005515(InterPro)
Mch1g1975 458 SUPERFAMILY Protein kinase-like (PK-like) 172 434 IPR011009 -
Mch1g1975 458 FunFam serine/threonine-protein kinase STY46-like 149 232 - -
Mch1g1975 458 Pfam Protein tyrosine and serine/threonine kinase 161 409 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g1975 458 Pfam Ankyrin repeats (3 copies) 43 131 IPR002110 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1975 Mch-Chr1:19388249 Mch7g1239 Mch-Chr7:15937435 4.92E-43 dispersed
Mch4g0922 Mch-Chr4:7081844 Mch1g1975 Mch-Chr1:19388249 9.81E-94 transposed
Mch9g2102 Mch-Chr9:21974676 Mch1g1975 Mch-Chr1:19388249 1.55E-98 transposed
Mch1g1975 Mch-Chr1:19388249 Mch2g0711 Mch-Chr2:4849705 1.63E-128 wgd
Mch1g1975 Mch-Chr1:19388249 Mch3g1125 Mch-Chr3:14599627 1.51E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77166 PF07714 PK_Tyr_Ser-Thr 7.30E-54 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1975 - - - 0.0