Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1976 TTCCAGAATCAAGAAGAAAGGATGTCAGATTCACCTCAGAGGAAGATGGGGAGGGGGAAGATTGAGATTAAGAGGATCGAAAATACAACCAATCGTCAAGTCACTTTCTGTAAGAGACGCAATGGGCTGCTCAAAAAGGCTTATGAACTTTCTGTTCTATGTGATGCTGAGGTTGCTCTCATCGTTTTCTCCAGCCGTGGCCGCCTTTATGAGTATGCTAACAATAGTGTGAAGGCAACAATTGATAGATACAAGAAGGCCTCCTCAGATTCCTCCAACACTGGATCTACTTCTGAAGCTAACACTCAGTTTTATCAGCAAGAAGCTGCCAAACTTCGAGTCCAGATTGGTAATTTGCAGAACTCAAACAGGAACATGCTGGGTGAGTCCCTAAGTTCTTTGAGTGTAAAAGATCTGAAAAGCCTGGAGAGTAAATTAGAGAAAGGAATTAGCAGAATTAGGTCCAAAAAGAATGAGCTCCTCTTTGCTGAAATTGAGTATATGCGGAAAAGGGAAATTGATTTGCACAACAACAATCAGCTGCTTCGAGCCAAGATAGCCGAGAGTGAAAGAAATGCCAGCATGATAGGGGGAGATTTCGAGCTGATGCAATCTCATCCGTACGATCCAAGGGACTTCTTCCAAGTGAACGGCTTACAACATAATAATAATCATCAGTATCCACGCCAAGACAACATGGCTCTTCAATTAGTTTAA 717 42.4 FQNQEERMSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIDRYKKASSDSSNTGSTSEANTQFYQQEAAKLRVQIGNLQNSNRNMLGESLSSLSVKDLKSLESKLEKGISRIRSKKNELLFAEIEYMRKREIDLHNNNQLLRAKIAESERNASMIGGDFELMQSHPYDPRDFFQVNGLQHNNNHQYPRQDNMALQLV 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19399983 19406292 + MC01g1507 Mch1g1976 676868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1976 238 PANTHER SERUM RESPONSE FACTOR HOMOLOG 16 218 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Mch1g1976 238 SMART madsneu2 16 75 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch1g1976 238 Coils Coil 139 159 - -
Mch1g1976 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch1g1976 238 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch1g1976 238 SUPERFAMILY SRF-like 17 91 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch1g1976 238 Pfam K-box region 98 186 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch1g1976 238 MobiDBLite consensus disorder prediction 1 20 - -
Mch1g1976 238 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch1g1976 238 Gene3D - 28 110 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch1g1976 238 CDD MADS_MEF2_like 17 93 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Mch1g1976 238 ProSiteProfiles K-box domain profile. 102 192 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch1g1976 238 FunFam agamous-like MADS-box protein AGL11 28 111 - -
Mch1g1976 238 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch1g1976 238 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch1g1976 238 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0724 Mch-Chr11:4832939 Mch1g1976 Mch-Chr1:19399983 3.05E-45 dispersed
Mch11g1928 Mch-Chr11:19162068 Mch1g1976 Mch-Chr1:19399983 7.18E-87 dispersed
Mch1g0406 Mch-Chr1:8244138 Mch1g1976 Mch-Chr1:19399983 2.49E-36 dispersed
Mch1g1360 Mch-Chr1:15559663 Mch1g1976 Mch-Chr1:19399983 1.12E-41 dispersed
Mch1g1976 Mch-Chr1:19399983 Mch8g0149 Mch-Chr8:929268 1.56E-45 dispersed
Mch10g0705 Mch-Chr10:4870193 Mch1g1976 Mch-Chr1:19399983 3.34E-23 transposed
Mch1g1976 Mch-Chr1:19399983 Mch2g0713 Mch-Chr2:4873489 1.31E-84 wgd
Mch1g1976 Mch-Chr1:19399983 Mch3g1043 Mch-Chr3:14054124 5.82E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42816 PF01486 K-box 2.40E-28 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1976 K09264 - csv:101221430 418.313