Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1978 ATGTCCCTATCGTCTCTCTCTCCCTCTACCGAAAAACAATATAAAAATCTCACTCTTCACTCTTCAATCTCTGCATTTTCCATTAACAATCAAATGGAGAAATATTCAACTTTCGTTTGCCTTCTCCTCCTCCTCCTCCTCCTCCTTTTTCAACAAGCCTCTCCTTCACCAAATAACGACCAGGCGGCTTACATTGTGTACTTTGGGGAGCACCGTGGAGACAAGGCATGGCACGAAATAGAAGCAACCCACCATTCGTATTTGACCTCTGTGAAGGACACTGAAGAAGAAGCAAGATCGTCTCTTATTTACAGCTACAAACACAGCATCAATGGCTTTGCAGCAGTCCTCAGCTCAGAAGAAGCCTCTAAACTTTCAGAAATGGATTCGGTTGTGCGTGTGATTCGGAGTGAGAAGTACAGCACTCAAACCACAAGGTCGTGGGAGTTCTCAGGGGTGGAAGAGGATAAACCGAGGCTTAATGACTTGGTTTCCAGAGCTAAATTTGGGAAAGATGTTGTCATTGGGATGCTTGACAGTGGTGTGTGGCCAAAATCCAAGAGCTTTAGTGATAAAGGGATGGGGCCCATTCCAAAATCATGGAGAGGAATCTGCCAAACAGGACCTGCCTTTCAATCTGCTCATTGTAATAGGAAGATAATTGGAGCACGATATTACCTGAAGGGATACGAGAATTACTTTGGGCGTTTAAATGAAACGGAGGACTACCGATCACCCTGCGACAAGGACGGCCACGGCTCACACACAGCCTCCACCGCCGGCGGCCGGAGGGTGTTCAACGTGTCGGCGTTCGGCGGCGTGGCGAGGGGCACGGCGTCGGGCGGCGCCCCGGGTGCCCGGCTGGCAATTTACAAAGTGTGCTGGGCAATTCCGAAGCAGATGAAAATTCTGGGCAACGTTTGCTTTGACACCGACGTGTTGGCCGCCATGGACGACGCCATCGCCGACGGCGTCGACGTTCTCAGCCTGTCGATCGGAAAGGCGGATCCGTACAATTACACCGACGACGGAATCGCCATCGGAGCCCTCCACGCCGTTAAAAAGGACATTGTGGTGTCTTGTAGCGCCGGGAACTACGGGCCCACGCCGTCCGCGTTGTCCAATTTCGCGCCGTGGATTATCACCGTCGGAGCCAGCACTGTGGACAGGGAATTTTACTCTCCCGTAATTCTGGGAAATGGATTCAAGATCAGGGGATTATCAGTGGCCCCATCGATGCTTAAGAGGAAGAAGATGTACCCATTAGTATATGCTGGAGATATAATGAAGCCGCATGTACCAAAAAACCAATCCGGAGTATGTGTTGCGGGGTCGCTTTCACACGAGAAAGCGAGAGGAAAAATAGTGCTGTGCTACAGAGCAGAAGGAATCAGCAGATACGCCGGCAGCCTCGAAGTGAAGAGGTCCGGTGGCGCCGGAATGATTCTCGGAAACGTCCCGGCGGTCGGACGTAAGCTGCACGCCGATCCCCATTTTGTTCCGGCCACTGCTGTGTCTTACGAAGATGCAAATATAATCCTCAAATATATCAAATCTCGAACCAATCCAACGGCGACTATTGTTCCCCCGATCACGATCTACGGCTCCAGGCCAGCGCCGGCCATGGCCAACTTCTCTAGCAGAGGTCCAAATCCCATCGACCCTCATATTCTCAAGCCGGACATAACAGCACCGGGAGTGGACATTCTAGCGGCATGGTCGGGAGAGGATTCCCCCACAAAACTGCCCAAATCCCTAGACCCTCGCGTCGTCCACTACAATCTCTACTCGGGCACCTCAATGTCGTGCCCCCACGTGGCCGCCGCCGCCGCCCTCCTCCGCGCCATCCACCCCACCTGGTCCCAAGCCGCCATCCGCTCCGCCCTCATGACCACCGCCACCACCACCAACAAATACGGCCGCCCCATCACCGACGACGCCTCCGACCACTCCGCCCCGGCCACCCCCTTCTCCTACGGCTCCGGCCACTTCCGCCCCTCCAAGGCCGCCGACCCGGGCCTCGTCTACGACGCCAACTACACCGACTACCTCGTCCACCTCTGCGCCCTCAAAATGGCGCACTCCATCGACCCCTCCTTCACGTGCCCGGCGCGTGCACGTGCACATGACCTGAACTACCCTTCCGTGGCCGTCCCCAGGCTGAGAGGCGGCGGCGGCGGCGGCGTGAGAGTTGTGAGGACGGTGAGGAACGTGGGGGGGAGTAAAAGCGCGTACTTCTTCAGGGCGTCGGCGCCGGCGGGAGTGAGCGTGAGGGCCTCTCCCAGCGTTCTGTACTTCTCGCGAATGGGGCAGAGGAAGAGATTCACGATCACAATAAGTGGGAAGGCGGAGATTGGTGGTGTTGATGGGAGCGGCTACTCATTTGGTTGGTTCGCTTGGACCGATGGAATCCACTTTGTAAGAAGCCCAATTGCTATCTCCTCCGCTTAG 2451 55.24 MSLSSLSPSTEKQYKNLTLHSSISAFSINNQMEKYSTFVCLLLLLLLLLFQQASPSPNNDQAAYIVYFGEHRGDKAWHEIEATHHSYLTSVKDTEEEARSSLIYSYKHSINGFAAVLSSEEASKLSEMDSVVRVIRSEKYSTQTTRSWEFSGVEEDKPRLNDLVSRAKFGKDVVIGMLDSGVWPKSKSFSDKGMGPIPKSWRGICQTGPAFQSAHCNRKIIGARYYLKGYENYFGRLNETEDYRSPCDKDGHGSHTASTAGGRRVFNVSAFGGVARGTASGGAPGARLAIYKVCWAIPKQMKILGNVCFDTDVLAAMDDAIADGVDVLSLSIGKADPYNYTDDGIAIGALHAVKKDIVVSCSAGNYGPTPSALSNFAPWIITVGASTVDREFYSPVILGNGFKIRGLSVAPSMLKRKKMYPLVYAGDIMKPHVPKNQSGVCVAGSLSHEKARGKIVLCYRAEGISRYAGSLEVKRSGGAGMILGNVPAVGRKLHADPHFVPATAVSYEDANIILKYIKSRTNPTATIVPPITIYGSRPAPAMANFSSRGPNPIDPHILKPDITAPGVDILAAWSGEDSPTKLPKSLDPRVVHYNLYSGTSMSCPHVAAAAALLRAIHPTWSQAAIRSALMTTATTTNKYGRPITDDASDHSAPATPFSYGSGHFRPSKAADPGLVYDANYTDYLVHLCALKMAHSIDPSFTCPARARAHDLNYPSVAVPRLRGGGGGGVRVVRTVRNVGGSKSAYFFRASAPAGVSVRASPSVLYFSRMGQRKRFTITISGKAEIGGVDGSGYSFGWFAWTDGIHFVRSPIAISSA 816
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19416328 19423553 + MC01g1509 Mch1g1978 676870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1978 816 ProSitePatterns Serine proteases, subtilase family, serine active site. 598 608 IPR023828 -
Mch1g1978 816 Pfam Subtilase family 170 644 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Mch1g1978 816 Gene3D - 681 816 - -
Mch1g1978 816 FunFam Subtilisin-like protease SBT5.3 52 143 - -
Mch1g1978 816 Gene3D - 389 534 - -
Mch1g1978 816 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 64 811 IPR045051 -
Mch1g1978 816 Gene3D Peptidase S8/S53 domain 172 680 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Mch1g1978 816 Pfam PA domain 420 512 IPR003137 -
Mch1g1978 816 SUPERFAMILY Subtilisin-like 160 674 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Mch1g1978 816 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 51 142 IPR037045 -
Mch1g1978 816 CDD Peptidases_S8_3 140 634 IPR034197 -
Mch1g1978 816 Pfam Fibronectin type-III domain 710 813 IPR041469 -
Mch1g1978 816 ProSiteProfiles Serine proteases, subtilase domain profile. 147 670 - -
Mch1g1978 816 FunFam Subtilisin-like protease SBT1.5 172 456 - -
Mch1g1978 816 CDD PA_subtilisin_like 396 527 - -
Mch1g1978 816 FunFam subtilisin-like protease SBT1.5 389 534 - -
Mch1g1978 816 Pfam Peptidase inhibitor I9 64 142 IPR010259 -
Mch1g1978 816 PRINTS Subtilisin serine protease family (S8) signature 597 613 IPR015500 -
Mch1g1978 816 PRINTS Subtilisin serine protease family (S8) signature 248 261 IPR015500 -
Mch1g1978 816 PRINTS Subtilisin serine protease family (S8) signature 170 189 IPR015500 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1978 Mch-Chr1:19416328 Mch4g0363 Mch-Chr4:2285821 1.67E-206 dispersed
Mch1g1978 Mch-Chr1:19416328 Mch1g1263 Mch-Chr1:14859196 5.11E-188 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1978 - - - 0.0