Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1998 ATGGAGAAAGAGCCTCTTCTTCCGTATCAGAGCCCAAGAGCGAAACTGCCACCACCGATTCCTCTATTATGTCCGCTCCCTGAAAATGACGAAATTACTCTGCCTCTCACGCCCACGGAGTTCAAAGACCGCTTGATTTTTGGACCTTCATCTTCTCCGCAGGACGCTTCTCCCATATTCGACGCCTTGACGCTTTCTCTGTCCTCCTCAAGATCCTCTCCTTCATCTTCTCTATATGACCCATCAACCCCTCTGGACCCTAAATCCCAATCCCAGTCCCAACAGGCTTGGCTTGTGGATTCCAATTACGCATGGCCCAAAACCAACCTCCACCGCTCCAAAACCGCACCTGCCATGGCGGTCATCAACGATGTCAACCATTCGCAGGAGCGCAAGCCTCAATTTGGTAACCAATCTATTATCCGCCAAGCTGTTGTTCTTCTAATTATTTACCTGTCCTTGGGCGTGCTCATCTATTGGATTAATCTTGACAATTTTACGGCTCACGAGACTCATCCTGTGGTCGATGCATTGTACTTTTGCATTGTGACAATGTGCACCATTGGGTATGGAGATATTACGCCAAATAGTACGGCGACGAAGCTGTTCTCGGTACTGTTCGTGTTGGTGGGATTTGGGTTTATTGATATATTGCTCTCTGGAATGGTCAGTTATGTGCTTGATTTGCAGGAGAGTTATTTGTTAAGGAATGTAAAGAGGGGGGTGCAGCGTGAGTCTGGGAAATCCTATATAATTGATGTGAAGAAGGGAAGAATGAGGATTAGAATGAAAGTGGCATTGGCTTTAGGTGTTGTGATTCTTTGTATAGGAGTTGGGATGGGTGTTATGCATTTTGTTGAGGACCTTGGGTGGCTGGATTCGTTTTATCTTTCGGTCATGTCTGTGACAACGGTTGGGTATGGTGATCAGGCATTTAAGTCACTGACAGGTCGTATTTTTGCTTCAATCTGGTTGCTTGTGTCGACCCTTGCTGTTGCTCGAGCATTTCTTTATTTAGCCGAGGCAAGAGTGGATAAGCGGCATAGGATGATGGCGAAATGGATACTTGGTCAGGATATGACTGTCTCTGAGTTTCTTGCTGCTGACATTGACAACAATGGCTTTGTGAGTAGGTCAGAATATGTGATATACAAGCTGAAGGAGATGGGTAAGGTCTCAGAGAAGGATGTCATGCAGATATCTAATAACTTTGACAGGCTAGACACTGGCAAATGTGGGAAAATTACACTGGCTGATCTCTTGGAAAGTCATCACTGA 1278 45.77 MEKEPLLPYQSPRAKLPPPIPLLCPLPENDEITLPLTPTEFKDRLIFGPSSSPQDASPIFDALTLSLSSSRSSPSSSLYDPSTPLDPKSQSQSQQAWLVDSNYAWPKTNLHRSKTAPAMAVINDVNHSQERKPQFGNQSIIRQAVVLLIIYLSLGVLIYWINLDNFTAHETHPVVDALYFCIVTMCTIGYGDITPNSTATKLFSVLFVLVGFGFIDILLSGMVSYVLDLQESYLLRNVKRGVQRESGKSYIIDVKKGRMRIRMKVALALGVVILCIGVGMGVMHFVEDLGWLDSFYLSVMSVTTVGYGDQAFKSLTGRIFASIWLLVSTLAVARAFLYLAEARVDKRHRMMAKWILGQDMTVSEFLAADIDNNGFVSRSEYVIYKLKEMGKVSEKDVMQISNNFDRLDTGKCGKITLADLLESHH 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19560765 19565263 + MC01g1529 Mch1g1998 676890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1998 425 MobiDBLite consensus disorder prediction 1 21 - -
Mch1g1998 425 PRINTS Two pore domain K+ channel signature 183 211 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Mch1g1998 425 PRINTS Two pore domain K+ channel signature 303 312 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Mch1g1998 425 ProSitePatterns EF-hand calcium-binding domain. 369 381 IPR018247 -
Mch1g1998 425 MobiDBLite consensus disorder prediction 70 91 - -
Mch1g1998 425 Gene3D - 334 425 - -
Mch1g1998 425 SUPERFAMILY Voltage-gated potassium channels 255 361 - -
Mch1g1998 425 Pfam Ion channel 272 341 IPR013099 -
Mch1g1998 425 Pfam Ion channel 147 226 IPR013099 -
Mch1g1998 425 Gene3D - 137 237 - -
Mch1g1998 425 FunFam Two-pore potassium channel 5 129 239 - -
Mch1g1998 425 Gene3D - 270 333 - -
Mch1g1998 425 SUPERFAMILY EF-hand 363 422 IPR011992 -
Mch1g1998 425 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 173 372 IPR003280 GO:0005267(InterPro)|GO:0005887(PANTHER)|GO:0009705(PANTHER)|GO:0015271(PANTHER)|GO:0016020(InterPro)|GO:0022841(PANTHER)|GO:0030322(PANTHER)|GO:0071805(PANTHER)|GO:0071805(InterPro)
Mch1g1998 425 FunFam Two-pore potassium channel 3 248 362 - -
Mch1g1998 425 SUPERFAMILY Voltage-gated potassium channels 140 226 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1998 Mch-Chr1:19560765 Mch3g0736 Mch-Chr3:11629635 1.28E-58 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1998 K05389 - csv:101220017 757.673