Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1999 ATGTCTGATGAATTCAGAGAGCTTTTTTTTTCGAACCCTTTTCGAGATCATGGTGGGATGGATTATACGGAGGGGATGGACTACGATTCTCTAGCGAGAGCCTTTGGGTTGGATTCTGATCAAGCCATTGATAATATTGAATCGCCCCACCAGCGCCTAGGCGCCGGTGGTAATAGCAACAGTAACGAAATTTCGGGGACTCCCATGAATTCTTCTGGTTCGTTTTCCTCTTCTGAGGAGGATGATTCTGGAAAGAGTGGGAAAGAGAAGACTGATCACCAGATTTCCAAAGAAATGGAAGAAGATCATAATTATGGAGGAGGAGAGAGCTCTAAGGCTGCGACGAAATCAAAGAAGAAGGGAGAGAAGAAGGAGAGAGAGCCGAGATTTGCTTTCATGACAAAGAGCGAGGTGGATCATTTGGAGGATGGATATAGATGGAGAAAATATGGACAAAAAGCTGTCAAGAACAGCGCTTATCCCAGAAGCTATTACAGATGCACGACTCAGAAATGTGGGGTGAAGAAACGAGTGGAGAGATCATTTGAAGATCCATCTATTGTGATTACGACGTACGAAGGACAACACAACCACCCAATTCCGGCGACGTTAAGGGGAAACCTGTCGGTTGCCTCCGCGTTTCCGCCGTCCATGCTGACGCCAATGCCGGTGGTCGGTGCTGCCAGGTTTCTTCCAGATCAACTATTGTTGAGTAATAATAATAATGCTTCTGCAGGCCATAACCACGTCGCCGGCGCCGCCGCGTCCGCTTATTCACAAAGCAGCCTCGGCTATTCTTATGGCGGCCGGCAGCCGGAGTATGGGCTTCTGCAGGACATTTTTCCGGCTCCGTCGTCGTCGTTCTTTAACCGGCAGCCGTGA 882 48.75 MSDEFRELFFSNPFRDHGGMDYTEGMDYDSLARAFGLDSDQAIDNIESPHQRLGAGGNSNSNEISGTPMNSSGSFSSSEEDDSGKSGKEKTDHQISKEMEEDHNYGGGESSKAATKSKKKGEKKEREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSAYPRSYYRCTTQKCGVKKRVERSFEDPSIVITTYEGQHNHPIPATLRGNLSVASAFPPSMLTPMPVVGAARFLPDQLLLSNNNNASAGHNHVAGAAASAYSQSSLGYSYGGRQPEYGLLQDIFPAPSSSFFNRQP 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19577315 19579145 + MC01g1530 Mch1g1999 676891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1999 293 FunFam WRKY transcription factor 57 127 201 - -
Mch1g1999 293 MobiDBLite consensus disorder prediction 42 130 - -
Mch1g1999 293 SUPERFAMILY WRKY DNA-binding domain 133 201 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch1g1999 293 Pfam WRKY DNA -binding domain 142 199 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch1g1999 293 MobiDBLite consensus disorder prediction 52 80 - -
Mch1g1999 293 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 83 207 IPR044810 GO:0003700(InterPro)
Mch1g1999 293 SMART WRKY_cls 141 200 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch1g1999 293 ProSiteProfiles WRKY domain profile. 136 201 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch1g1999 293 MobiDBLite consensus disorder prediction 81 130 - -
Mch1g1999 293 Gene3D WRKY domain 126 202 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1999 Mch-Chr1:19577315 Mch4g0053 Mch-Chr4:387618 5.49E-46 dispersed
Mch1g1067 Mch-Chr1:13626732 Mch1g1999 Mch-Chr1:19577315 6.61E-34 transposed
Mch2g1464 Mch-Chr2:10872866 Mch1g1999 Mch-Chr1:19577315 3.87E-32 transposed
Mch5g0954 Mch-Chr5:7126538 Mch1g1999 Mch-Chr1:19577315 1.86E-31 transposed
Mch8g1391 Mch-Chr8:10352924 Mch1g1999 Mch-Chr1:19577315 3.08E-35 transposed
Mch1g1999 Mch-Chr1:19577315 Mch2g0722 Mch-Chr2:4928813 6.33E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42817 PF03106 WRKY 9.90E-26 CL0274 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1999 - - - 0.0