Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch1g1999 | ATGTCTGATGAATTCAGAGAGCTTTTTTTTTCGAACCCTTTTCGAGATCATGGTGGGATGGATTATACGGAGGGGATGGACTACGATTCTCTAGCGAGAGCCTTTGGGTTGGATTCTGATCAAGCCATTGATAATATTGAATCGCCCCACCAGCGCCTAGGCGCCGGTGGTAATAGCAACAGTAACGAAATTTCGGGGACTCCCATGAATTCTTCTGGTTCGTTTTCCTCTTCTGAGGAGGATGATTCTGGAAAGAGTGGGAAAGAGAAGACTGATCACCAGATTTCCAAAGAAATGGAAGAAGATCATAATTATGGAGGAGGAGAGAGCTCTAAGGCTGCGACGAAATCAAAGAAGAAGGGAGAGAAGAAGGAGAGAGAGCCGAGATTTGCTTTCATGACAAAGAGCGAGGTGGATCATTTGGAGGATGGATATAGATGGAGAAAATATGGACAAAAAGCTGTCAAGAACAGCGCTTATCCCAGAAGCTATTACAGATGCACGACTCAGAAATGTGGGGTGAAGAAACGAGTGGAGAGATCATTTGAAGATCCATCTATTGTGATTACGACGTACGAAGGACAACACAACCACCCAATTCCGGCGACGTTAAGGGGAAACCTGTCGGTTGCCTCCGCGTTTCCGCCGTCCATGCTGACGCCAATGCCGGTGGTCGGTGCTGCCAGGTTTCTTCCAGATCAACTATTGTTGAGTAATAATAATAATGCTTCTGCAGGCCATAACCACGTCGCCGGCGCCGCCGCGTCCGCTTATTCACAAAGCAGCCTCGGCTATTCTTATGGCGGCCGGCAGCCGGAGTATGGGCTTCTGCAGGACATTTTTCCGGCTCCGTCGTCGTCGTTCTTTAACCGGCAGCCGTGA | 882 | 48.75 | MSDEFRELFFSNPFRDHGGMDYTEGMDYDSLARAFGLDSDQAIDNIESPHQRLGAGGNSNSNEISGTPMNSSGSFSSSEEDDSGKSGKEKTDHQISKEMEEDHNYGGGESSKAATKSKKKGEKKEREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSAYPRSYYRCTTQKCGVKKRVERSFEDPSIVITTYEGQHNHPIPATLRGNLSVASAFPPSMLTPMPVVGAARFLPDQLLLSNNNNASAGHNHVAGAAASAYSQSSLGYSYGGRQPEYGLLQDIFPAPSSSFFNRQP | 293 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 19577315 | 19579145 | + | MC01g1530 | Mch1g1999 | 676891 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch1g1999 | 293 | FunFam | WRKY transcription factor 57 | 127 | 201 | - | - | |
Mch1g1999 | 293 | MobiDBLite | consensus disorder prediction | 42 | 130 | - | - | |
Mch1g1999 | 293 | SUPERFAMILY | WRKY DNA-binding domain | 133 | 201 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch1g1999 | 293 | Pfam | WRKY DNA -binding domain | 142 | 199 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch1g1999 | 293 | MobiDBLite | consensus disorder prediction | 52 | 80 | - | - | |
Mch1g1999 | 293 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 83 | 207 | IPR044810 | GO:0003700(InterPro) | |
Mch1g1999 | 293 | SMART | WRKY_cls | 141 | 200 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch1g1999 | 293 | ProSiteProfiles | WRKY domain profile. | 136 | 201 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch1g1999 | 293 | MobiDBLite | consensus disorder prediction | 81 | 130 | - | - | |
Mch1g1999 | 293 | Gene3D | WRKY domain | 126 | 202 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch1g1999 | Mch-Chr1:19577315 | Mch4g0053 | Mch-Chr4:387618 | 5.49E-46 | dispersed | |
Mch1g1067 | Mch-Chr1:13626732 | Mch1g1999 | Mch-Chr1:19577315 | 6.61E-34 | transposed | |
Mch2g1464 | Mch-Chr2:10872866 | Mch1g1999 | Mch-Chr1:19577315 | 3.87E-32 | transposed | |
Mch5g0954 | Mch-Chr5:7126538 | Mch1g1999 | Mch-Chr1:19577315 | 1.86E-31 | transposed | |
Mch8g1391 | Mch-Chr8:10352924 | Mch1g1999 | Mch-Chr1:19577315 | 3.08E-35 | transposed | |
Mch1g1999 | Mch-Chr1:19577315 | Mch2g0722 | Mch-Chr2:4928813 | 6.33E-44 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42817 | PF03106 | WRKY | 9.90E-26 | CL0274 | Mch | TF |
Pathway information
