Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g2002 AGATATAGATACCAATGGATAAGAATCTATTGCCTCTGCCCACCATTTAAACTCCCCAAACCCACACTTCTTTCCCACCACAGAAACCAACAGCCCATTCAAAATCACAACTTTCTCTCTGCCCCACCAATGGCTGCTTCCACCATGGCTCTCTCCTCCCCATCCCTCGCCGGCAAGGCCGTGAAGCTCTCCCCCTCCGCCCCTGAGCTTCAGGGCAATGGAAGAGTCAGCATGAGGAAATCCGTCTCCAAGCCAGTTTCCTCCGGCAGCCCCTGGTACGGCCCCGACCGTGTCAAGTACTTGGGCCCATTCTCCGGCGAGCCCCCGTCCTACCTCACTGGAGAATTCCCCGGTGACTACGGCTGGGACACTGCTGGCCTTTCAGCCGACCCCGAGACCTTCGCCAAGAACCGTGAGCTCGAGGTGATCCACTCTAGATGGGCCATGCTTGGGGCTCTTGGTTGTGTCTTCCCTGAGCTTCTGTCCCGCAATGGGGTGAAGTTTGGCGAGGCCGTGTGGTTCAAGGCCGGATCTCAGATCTTCAGCGAGGGTGGGCTCGACTATTTGGGTAACCCTAGCTTGATCCACGCACAGAGCATTTTGGCCATCTGGGCATCTCAGGTTGTGTTGATGGGCGCCGTCGAGGGCTACCGTATTGCCGGTGGTCCCCTCGGTGAGGTGACCGACCCGATCTACCCAGGTGGAAGCTTTGACCCATTGGGTTTGGCTGATGACCCAGAGGCATTTGCTGAATTGAAAGTGAAGGAGCTCAAGAACGGAAGGTTGGCCATGTTCTCCATGTTTGGGTTCTTCGTTCAGGCCATTGTGACTGGAAAGGGTCCATTGGAGAACTTGGCAGACCATCTTGCAGACCCAGTTAACAACAACGCCTGGGCCTACGCCACAAACTTTGTTCCCGGAAAG 924 56.17 RYRYQWIRIYCLCPPFKLPKPTLLSHHRNQQPIQNHNFLSAPPMAASTMALSSPSLAGKAVKLSPSAPELQGNGRVSMRKSVSKPVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19602157 19603085 - MC01g1533 Mch1g2002 676894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g2002 308 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 47 308 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Mch1g2002 308 FunFam Chlorophyll a-b binding protein, chloroplastic 99 301 - -
Mch1g2002 308 Pfam Chlorophyll A-B binding protein 108 275 IPR022796 -
Mch1g2002 308 SUPERFAMILY Chlorophyll a-b binding protein 91 305 - -
Mch1g2002 308 Gene3D Chlorophyll a/b binding protein domain 99 301 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1702 Mch-Chr11:15941280 Mch1g2002 Mch-Chr1:19602157 1.16E-69 dispersed
Mch1g2002 Mch-Chr1:19602157 Mch3g1005 Mch-Chr3:13779783 5.60E-187 dispersed
Mch1g2002 Mch-Chr1:19602157 Mch1g2004 Mch-Chr1:19604656 9.00E-194 proximal
Mch11g0017 Mch-Chr11:145821 Mch1g2002 Mch-Chr1:19602157 8.87E-64 transposed
Mch8g2102 Mch-Chr8:24052749 Mch1g2002 Mch-Chr1:19602157 2.77E-152 transposed
Mch1g2002 Mch-Chr1:19602157 Mch2g0724 Mch-Chr2:4940071 1.99E-184 wgd
Mch1g2002 Mch-Chr1:19602157 Mch3g1003 Mch-Chr3:13775686 5.99E-191 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g2002 K08912 - rcu:8289767 520.39