Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g2003 ATGGCTTCTAGCGTCAGGTTAGCCATTTTCATGATAGCTAGTTTTGTTCTGGTTCCAGTTCTATTTGCCCAACACCTTTCGGCCATGGAAGTTGAACTCGAGTCCTTAAAGGCCTTCAAGAGTGCCATCCATTTAGACCCATTGGGAGCACTTTCTGATTGGACGGACCTAAACCATCACTGCAATTGGTCGGGCGTTGTCTGTGATCCTGATTCCAAGCGTGTCATTTCGATTACTCTGGTTGATCAGCAGCTTGGAGGCGAGATTTCTCCTTTTATTGGGAACCTCTCTGCTCTCCAGGTTCTTGATCTGACTCAGAATTCGTTTACTGGGCAGATTCCTGGTGAGTTGGGTTCGTGTTCCAACCTTTCTCAGCTCACTCTTTACAGAAATTTTCTTTCAGGTCAGATTCCATCACAGTTGGGAAACCTTGGCCTCCTGCAATCAGTTGATTTGGGCAATAACTCTTTGAAAGGAAGCATTCCTGAGAGCATTTGCAACTGCACGAATTTATTGGCCTTTGGTGTGGTGTTTAACAATCTCACAGGCAGAATCCCATTGAACATAGGAAACTTGGTCAATCTTCAGATTCTGGTTGCTTACGGCAACAAGTTAGAAGGTTCCATTCCCATCTCGATTGGCAAATTAGAGGCACTGCAAGCTCTAGATTTTAGTCAGAACAACTTGTCTGGGATTGTACCAGTGGAGGTTGGGAATTTGTTGAATTTGGAGTCTCTCTTATTGTTTGAGAATGCTTTGGTTGGGAAAATTCCTGAAGAGATAGGTAAATGTGAGAACCTTCTTGCTCTGGAACTATACAACAATAAGTTCAGTGGTCCAATTCCTTCACAGCTAGGCTCTCTGGTCCACTTACAAACCTTGCGACTATATAAAAATAGACTAAATTCCACTATACCACAATCTCTCTTTCGGTTGAAAGGTTTAACCCATTTGCTTCTCTCAGAGAATGAGTTAAATGGATATATATCTTCTGATATTGGATCTTTGAGATCATTGCAGGTTTTGACTCTTCACTCAAATAGGTTTTCTGGGGTGATTCCTTCATCTTTGATAAACTTGACAAACCTAACACATTTGTCTCTGAGCTTCAATTTCTTTACAGGAGAGCTTCCATCCAATATAGGTCTACTTTATAACCTGAAGAGATTGACATTGAGCGGCAATCTCCTTACAGGTTCAATTCCATCAAGTATTACCAATTGCACCCAGCTTTTTATCATTGATCTTTCATTTAATGGGCTGACAGGGAAAATACCTAAGGGATTTGGGAAGTTGCGGAATCTAACTTCCCTCCTCCTCGGATCAAATAGGATTTTTGGTGAAATCCCAGATGATTTCTTTAATTGCTCATCTCTGGTTATCGTTGACCTGGCCGAAAACAATTTCACTGGATTGTTAAAACCCAGTATTAGCAAGCTTTCCAATATTGAAGTTTTCAGAGCCGCATCAAATTCATTTTCTGGGGAAATTCCAAGGGAAATTGGTAACTTAAGCAGACTCAACACATTAATACTTGCAGAAAATAAATTTTCAGGTCAAATTCCTGAAGAGTTGTCTAAGCTTTCTCTTCTTCAAGCTCTTTCTTTGCATGACAATGCATTGGAAGGAAAGATTCCAGAGAAAATATTTGATCTGAAACAACTGATTCATCTTCATTTGCAGAACAACAAGTTCATAGGTCCAATTCCAGACGCCATCTCAAAACTAGAGCTCCTTTCATATTTGGATCTCCATGGTAACATGCTTAATGGATCCATTCCTAAAAGTATGAGGAATCTTTATCGACTTGAGATGTTGGATCTGTCCCACAACCATCTATCTGGACCAATTCCTGGGGTTTTAATCTTAGGTACGAAAAATATACAGCTATACATGAACTTGTCATACAATTTTCTGGTAGGAGGTATTCCAACTGAGCTTGGGTTGTTGCAAATGATACAATCTGTTGACTTCTCAAACAACAATCTCACTGGGACTATTCCAACGGCAATTGGAGGTTGTAGAAATCTGTTCTTTCTTGATCTGTCAGGAAATGATCTTTCTGGTATGCTTCCAGATAAAGCTTTTACTGGAATGAATATGCTCACAAACTTGAACCTTTCACAGAACAAAATAGCTGGCGAAATCCCAGAAGAATTGGCAAATCTGGAGCACTTGTACTCGTTGGACCTTTCTCAGAATCAGATCAATGGCAGCATCCCTCAGAACCTTGCAAAACTTTCAGCTCTGAAGTACGTCAACCTTTCCTTCAATCAACTAGAAGGTCCTGTTCCAGACACTGGAATATTCCGAAAAATAAATGCATCGAGCTTGATAGGAAATCCTGCTCTTTGTGGATCCAATTTCTTTGCTCCTTGTGGAAAGAAAGGTTCACGACATCTATCAAAAAAGACCTTACTAATTCTCATAACCCTTGGATCTATTATTATACTTTTAGCTATAATTTTATTAATTCTAGTCCTCAATCGATATTGTAAGCTTGAGAGATCTGTAAGTACTGAGAATCCTGAACCATCATTGGACTACGCATGTACCCTTGAGAGGTTTGATAAGAATGATATGGAGATTGCAACCGAATACTTCAGTGAAAACAACATTCTAGGTTCCAGTTCTTTAAGCACTGTCTACAAAGGTAAACTGGAGAATGGACAGATTGTAGCTGTAAAAAGACTCAATTTGCAATATTTCTCTGCAGAATCAGATGACTGCTTCAATAGAGAAATCAAGATTCTTAGTCAACTTAGACATAGGAACTTGGTGAAAGTACTCGGATATGCTTGGGAAAGCCAGAAACTGAAGGCTATCGTTCTTGGATACATGGAAAATGGGAACTTGGAAAGAATAATACATAACCCTGAAACAGATCAACGTAGTTGGACATTGTCGAAGAGAGTTGATGTTTGCGTTTCTGTTGCTAGTGGGATGCAATACCTGCACCATGGATATGATTTTCCCATCATTCACTGTGACTTGAAACCTTCAAATATTCTCCTTGATGGAGACTGGACAGCCCATGTGAGCGATTTTGGAACGGCTAGAAGAGTCCTGGGGGTGCAAAGCCAAGACGCAAGTAGCATTTCCTCTTCATCAGCTTTTGAAGGCACTATCGGATATTTGGCTCCAGAGTTCGCATACATGGGGAAAGTCACAACAAAAGTAGATGTGTTCAGTTTTGGCATAATACTGATGGAATTTCTGACAAAGAAAAGGCCAACTGCAACCATTGAAGCTGATGGACTCCCAGTCAGCTTGCAGCAACTGGTAGAGAGAGCTTTAGCAAATGGAAAGGAAGGGCTTATTCAAGTTTTGGATCCTGTGCTGGTCTTGGATCACTCAAAGGAGCAAACAAGGTTAGAAGAACTACTCAAACTAGCAGTAAGCTGTACCGACCAAAATCCTGAGAATAGACCTGACATGAATGAAGTTCTGTCTACCCTTTTGAAGCTGCAGATGGACGAATAG 3483 40.45 MASSVRLAIFMIASFVLVPVLFAQHLSAMEVELESLKAFKSAIHLDPLGALSDWTDLNHHCNWSGVVCDPDSKRVISITLVDQQLGGEISPFIGNLSALQVLDLTQNSFTGQIPGELGSCSNLSQLTLYRNFLSGQIPSQLGNLGLLQSVDLGNNSLKGSIPESICNCTNLLAFGVVFNNLTGRIPLNIGNLVNLQILVAYGNKLEGSIPISIGKLEALQALDFSQNNLSGIVPVEVGNLLNLESLLLFENALVGKIPEEIGKCENLLALELYNNKFSGPIPSQLGSLVHLQTLRLYKNRLNSTIPQSLFRLKGLTHLLLSENELNGYISSDIGSLRSLQVLTLHSNRFSGVIPSSLINLTNLTHLSLSFNFFTGELPSNIGLLYNLKRLTLSGNLLTGSIPSSITNCTQLFIIDLSFNGLTGKIPKGFGKLRNLTSLLLGSNRIFGEIPDDFFNCSSLVIVDLAENNFTGLLKPSISKLSNIEVFRAASNSFSGEIPREIGNLSRLNTLILAENKFSGQIPEELSKLSLLQALSLHDNALEGKIPEKIFDLKQLIHLHLQNNKFIGPIPDAISKLELLSYLDLHGNMLNGSIPKSMRNLYRLEMLDLSHNHLSGPIPGVLILGTKNIQLYMNLSYNFLVGGIPTELGLLQMIQSVDFSNNNLTGTIPTAIGGCRNLFFLDLSGNDLSGMLPDKAFTGMNMLTNLNLSQNKIAGEIPEELANLEHLYSLDLSQNQINGSIPQNLAKLSALKYVNLSFNQLEGPVPDTGIFRKINASSLIGNPALCGSNFFAPCGKKGSRHLSKKTLLILITLGSIIILLAIILLILVLNRYCKLERSVSTENPEPSLDYACTLERFDKNDMEIATEYFSENNILGSSSLSTVYKGKLENGQIVAVKRLNLQYFSAESDDCFNREIKILSQLRHRNLVKVLGYAWESQKLKAIVLGYMENGNLERIIHNPETDQRSWTLSKRVDVCVSVASGMQYLHHGYDFPIIHCDLKPSNILLDGDWTAHVSDFGTARRVLGVQSQDASSISSSSAFEGTIGYLAPEFAYMGKVTTKVDVFSFGIILMEFLTKKRPTATIEADGLPVSLQQLVERALANGKEGLIQVLDPVLVLDHSKEQTRLEELLKLAVSCTDQNPENRPDMNEVLSTLLKLQMDE 1160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19604012 19609748 - MC01g1534 Mch1g2003 676895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g2003 1160 Pfam Protein kinase domain 869 1151 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g2003 1160 PRINTS Leucine-rich repeat signature 600 613 - -
Mch1g2003 1160 PRINTS Leucine-rich repeat signature 219 232 - -
Mch1g2003 1160 FunFam Leucine-rich repeat receptor-like protein kinase TDR 357 621 - -
Mch1g2003 1160 SUPERFAMILY L domain-like 526 788 - -
Mch1g2003 1160 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 29 183 - -
Mch1g2003 1160 Pfam Leucine Rich Repeat 653 674 IPR001611 GO:0005515(InterPro)
Mch1g2003 1160 Pfam Leucine Rich Repeat 219 240 IPR001611 GO:0005515(InterPro)
Mch1g2003 1160 Pfam Leucine Rich Repeat 507 528 IPR001611 GO:0005515(InterPro)
Mch1g2003 1160 Pfam Leucine Rich Repeat 99 120 IPR001611 GO:0005515(InterPro)
Mch1g2003 1160 Pfam Leucine Rich Repeat 147 168 IPR001611 GO:0005515(InterPro)
Mch1g2003 1160 Pfam Leucine Rich Repeat 338 360 IPR001611 GO:0005515(InterPro)
Mch1g2003 1160 Pfam Leucine Rich Repeat 362 382 IPR001611 GO:0005515(InterPro)
Mch1g2003 1160 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 696 1156 IPR050647 -
Mch1g2003 1160 SMART serkin_6 868 1154 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g2003 1160 ProSiteProfiles Protein kinase domain profile. 868 1160 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g2003 1160 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 622 797 - -
Mch1g2003 1160 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 947 1160 - -
Mch1g2003 1160 SUPERFAMILY L domain-like 33 307 - -
Mch1g2003 1160 CDD STKc_IRAK 874 1156 - -
Mch1g2003 1160 Gene3D Ribonuclease Inhibitor 697 801 IPR032675 -
Mch1g2003 1160 Gene3D Ribonuclease Inhibitor 473 696 IPR032675 -
Mch1g2003 1160 Gene3D Transferase(Phosphotransferase) domain 1 947 1160 - -
Mch1g2003 1160 SUPERFAMILY RNI-like 304 615 - -
Mch1g2003 1160 Gene3D Ribonuclease Inhibitor 28 179 IPR032675 -
Mch1g2003 1160 SUPERFAMILY Protein kinase-like (PK-like) 848 1154 IPR011009 -
Mch1g2003 1160 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 828 946 - -
Mch1g2003 1160 Pfam Leucine rich repeat 556 613 IPR001611 GO:0005515(InterPro)
Mch1g2003 1160 Pfam Leucine rich repeat 691 736 IPR001611 GO:0005515(InterPro)
Mch1g2003 1160 Pfam Leucine rich repeat 386 445 IPR001611 GO:0005515(InterPro)
Mch1g2003 1160 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 184 283 - -
Mch1g2003 1160 Pfam Leucine rich repeat N-terminal domain 32 69 IPR013210 -
Mch1g2003 1160 SMART LRR_typ_2 360 383 IPR003591 -
Mch1g2003 1160 SMART LRR_typ_2 336 359 IPR003591 -
Mch1g2003 1160 SMART LRR_typ_2 675 698 IPR003591 -
Mch1g2003 1160 SMART LRR_typ_2 600 624 IPR003591 -
Mch1g2003 1160 SMART LRR_typ_2 288 312 IPR003591 -
Mch1g2003 1160 SMART LRR_typ_2 240 264 IPR003591 -
Mch1g2003 1160 SMART LRR_typ_2 699 722 IPR003591 -
Mch1g2003 1160 SMART LRR_typ_2 650 674 IPR003591 -
Mch1g2003 1160 SMART LRR_typ_2 96 120 IPR003591 -
Mch1g2003 1160 SMART LRR_typ_2 576 599 IPR003591 -
Mch1g2003 1160 SMART LRR_typ_2 384 408 IPR003591 -
Mch1g2003 1160 SMART LRR_typ_2 723 746 IPR003591 -
Mch1g2003 1160 SMART LRR_typ_2 747 772 IPR003591 -
Mch1g2003 1160 SMART LRR_typ_2 528 552 IPR003591 -
Mch1g2003 1160 SMART LRR_typ_2 144 168 IPR003591 -
Mch1g2003 1160 SMART LRR_typ_2 432 456 IPR003591 -
Mch1g2003 1160 SMART LRR_typ_2 216 239 IPR003591 -
Mch1g2003 1160 Gene3D Phosphorylase Kinase; domain 1 832 946 - -
Mch1g2003 1160 Gene3D Ribonuclease Inhibitor 378 472 IPR032675 -
Mch1g2003 1160 Gene3D Ribonuclease Inhibitor 282 377 IPR032675 -
Mch1g2003 1160 Gene3D Ribonuclease Inhibitor 180 281 IPR032675 -
Mch1g2003 1160 ProSitePatterns Serine/Threonine protein kinases active-site signature. 993 1005 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g2003 Mch-Chr1:19604012 Mch3g0571 Mch-Chr3:9933806 1.92E-51 dispersed
Mch1g1559 Mch-Chr1:16853180 Mch1g2003 Mch-Chr1:19604012 6.81E-11 transposed
Mch1g2003 Mch-Chr1:19604012 Mch10g0989 Mch-Chr10:7067822 1.36E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77167 PF00069 Pkinase 5.10E-44 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g2003 K13420 - csv:101215973 1844.71