Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g2004 ATGGCTGCTTCCACAATGGCTCTGTCTTCCCCATCTCTCGCCGGAAAGGCCGTGAAGCTCTCCCCCTCTGCCCCTGAGCTTCAGGGCAATGGAAGAGTCAGCATGAGGAAATCCGTCTCCAAGCCAGTTTCCTCCGGCAGCCCTTGGTATGGCCCCGACCGTGTCAAGTACTTGGGCCCATTCTCTGGCGAGCCCCCGTCCTATCTCACCGGAGAATTCCCCGGTGACTACGGCTGGGACACTGCTGGCCTTTCAGCCGACCCCGAGACCTTCGCCAAGAACCGTGAGCTCGAGGTGATTCACTCTAGATGGGCCATGCTTGGGGCTCTTGGCTGTGTCTTCCCTGAGCTTCTGTCCCGCAATGGGGTGAAGTTTGGCGAGGCCGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGGCTCGACTATTTGGGCAACCCCAGCTTGATCCACGCACAGAGCATTTTGGCCATCTGGGCATCTCAAGTCGTGTTGATGGGCGCCGTTGAGGGCTACCGTATTGCCGGTGGGCCGCTTGGCGAGGTGACCGACCCGATCTACCCAGGTGGAAGCTTTGACCCATTGGGTTTGGCTGATGACCCAGAGGCATTTGCTGAATTGAAGGTGAAGGAGCTCAAGAATGGAAGGTTGGCCATGTTCTCCATGTTTGGGTTCTTCGTTCAGGCCATTGTGACTGGAAAGGGTCCATTGGAGAACTTGGCAGACCACCTTGCAGACCCAGTCAACAACAATGCCTGGGCCTATGCCACAAACTTTGTTCCCGGAAAG 795 57.48 MAASTMALSSPSLAGKAVKLSPSAPELQGNGRVSMRKSVSKPVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19604656 19605450 + MC01g1535 Mch1g2004 676896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g2004 265 MobiDBLite consensus disorder prediction 18 46 - -
Mch1g2004 265 Pfam Chlorophyll A-B binding protein 65 232 IPR022796 -
Mch1g2004 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Mch1g2004 265 FunFam Chlorophyll a-b binding protein, chloroplastic 56 258 - -
Mch1g2004 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 4 265 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Mch1g2004 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g2004 Mch-Chr1:19604656 Mch3g1003 Mch-Chr3:13775686 1.76E-190 dispersed
Mch1g2002 Mch-Chr1:19602157 Mch1g2004 Mch-Chr1:19604656 9.00E-194 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g2004 K08912 - rcu:8289767 520.39