Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g2011 ATGGCGGGACTGAGAAGACTGGCGCAATTGAAACCGATAGCCGTAGAAGCGGCGGCCGGAACAGTTTTCGCCGCGAAGTTCCTGTGCGGCCTTCATGTCGCCAACACTTACGTCTGCACCGCCGCTCTCACCTACGGTCCCAGCATGCTCCCTACTCTGAATCTAACCGGCGATTTCATTTTGGCCGAGCGAGTCTCCACTCGCTTTGGCAGAGTCGGCGTCGGAGACATTGTCCTCGTGAGGTCCCCTGAGAACCCTCGGAAAGTGATGGCGAAGCGCTTGATGGGCATGGAGGGCGACTCTGTTACCTATGTTGTGGATCCGAAGAACAGTGATAGGTGCGAAACTGTTGTGGTTCCCAAGGGCCATGTTTGGATAGAGGGAGATAATATTTATGATTCAAATGATTCAAGACGTTTTGGGGCTGTCCCATATGGTCTTCTGCAAGGGAAAATATTCTGGAGGATATGGCCACCTAAAAGTTTTGGACCGTTGGAGAAGAGAAAATCGAATGAGACTGTTTTGTGA 528 51.7 MAGLRRLAQLKPIAVEAAAGTVFAAKFLCGLHVANTYVCTAALTYGPSMLPTLNLTGDFILAERVSTRFGRVGVGDIVLVRSPENPRKVMAKRLMGMEGDSVTYVVDPKNSDRCETVVVPKGHVWIEGDNIYDSNDSRRFGAVPYGLLQGKIFWRIWPPKSFGPLEKRKSNETVL 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19636524 19638319 + MC01g1540 Mch1g2011 676903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g2011 175 PRINTS Bacterial leader peptidase 1 (S26A) family signature 119 138 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Mch1g2011 175 PRINTS Bacterial leader peptidase 1 (S26A) family signature 37 53 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Mch1g2011 175 PRINTS Bacterial leader peptidase 1 (S26A) family signature 90 102 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Mch1g2011 175 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 9 166 IPR052064 GO:0006627(PANTHER)|GO:0042720(PANTHER)
Mch1g2011 175 CDD S26_SPase_I 46 152 IPR019533 GO:0004252(InterPro)|GO:0006465(InterPro)
Mch1g2011 175 Pfam Signal peptidase, peptidase S26 32 105 IPR019533 GO:0004252(InterPro)|GO:0006465(InterPro)
Mch1g2011 175 Pfam Signal peptidase, peptidase S26 114 157 IPR019533 GO:0004252(InterPro)|GO:0006465(InterPro)
Mch1g2011 175 SUPERFAMILY LexA/Signal peptidase 36 165 IPR036286 -
Mch1g2011 175 Gene3D Umud Fragment, subunit A 34 170 - -
Mch1g2011 175 FunFam Inner membrane protease subunit 1 35 164 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1023 Mch-Chr10:7433563 Mch1g2011 Mch-Chr1:19636524 4.88E-78 dispersed
Mch1g2011 Mch-Chr1:19636524 Mch5g1927 Mch-Chr5:19201569 1.84E-26 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g2011 K09647 - csv:101209167 309.686