Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g2058 ATGTCTTCCAGGTCCGTTAGTCATAGCAAAGCGCGGGTGGGGAGGTACGAGCTGGGACGAACCCTTGGAGAGGGCAGCTTCGCCAAGGTTAAGTTCGCTCGGAATTGCGAGACAGGAGAGAACGTGGCCATCAAAATCATCGAGAAAGATAAGATTCTCAAGCACAAGATGATCGGCCAGATTAAACGTGAAATATCAACGATGAAACTCATTAGGCATCCAAATGTCATACGCATGTATGAGGTGATGGCTAGCAAGACCAAGATATATATTGTTTTGGAATTTGTAACTGGTGGAGAACTTTTTGACAAAATTGCAAGCAAGGGAAGATTGAAAGAAGATGAAGCAAGAAAGTACTTTCAGCAGCTTATTAATGCCGTGGATTATTGTCATAGTAGAGGTGTCTGTCATCGAGACCTAAAGCCAGAGAATTTATTATTGGATGCTAGTGGTGTTCTAAAAGTTTCAGATTTCGGATTGAGTGCTGTACCTCAACAAGTTCGAGAAGATGGATTACTTCACACAACATGTGGAACGCCCAATTATGTTGCTCCAGAGGTCATCAACAATAAAGGCTACTATGGAGCAAGGGCTGACATATGGTCATGTGGGGTTATCCTTTTTGTTCTCATGGCAGGGTATTTGCCATTTGAAGAATCCAGTCTCATGGAATTGTATAAAAAGATTTTCAAGGCTGATTTCACGTGTCCGCCATGGTTCTCCTCTAGTGCCAAGAAACTAATCAAGAGAATCCTGGATCCGAATCCATTAACGAGAATTACAATTGCCGAGGTCCTTGAGAATGAGTGGTTTAAGAAAGGATACAAGGCACCTGCTTTTGAAAATGCTGAAATCAGTCTTGACGATGTTGATGCCATCTTTAATGAGTCAGCGGATACTCATAACCTTGTTGTTGAGAGAAGAGAAGAACGACCTGCTTCACCTGTCACCATGAATGCGTTTGAGCTCATCTCAAAATCTCAGGGCCTCAATCTTGCTACTCTTTTTGAGAAGCAAATGGGGGTAATTAAACGTGAAACAAGATTCACGTCCAACTGTCCTGCAGATGAGATCATTTCCAAGATTGAAAGGGCTGCAGTTCCTTTGGGTTTTGATGTGAAGATTAACAACTTCAAGATGAAGCTCCAAGGGGAAAAAACTGGACGTAAAGGTCATTTATCAGTGGCAACAGAGATTTTTCAGGTTGCTCCTTCATTGTACATCGTAGAGCTCCGCAAAGCAGGAGGCGATACTCTAGAATTTCACAAGTTCTATAGTAACCTCTCAACTGGACTGAAAGATATCGTATGGAGACACGGAGACAAGATGGGGCAAGAGGCCACTGGT 1347 42.84 MSSRSVSHSKARVGRYELGRTLGEGSFAKVKFARNCETGENVAIKIIEKDKILKHKMIGQIKREISTMKLIRHPNVIRMYEVMASKTKIYIVLEFVTGGELFDKIASKGRLKEDEARKYFQQLINAVDYCHSRGVCHRDLKPENLLLDASGVLKVSDFGLSAVPQQVREDGLLHTTCGTPNYVAPEVINNKGYYGARADIWSCGVILFVLMAGYLPFEESSLMELYKKIFKADFTCPPWFSSSAKKLIKRILDPNPLTRITIAEVLENEWFKKGYKAPAFENAEISLDDVDAIFNESADTHNLVVERREERPASPVTMNAFELISKSQGLNLATLFEKQMGVIKRETRFTSNCPADEIISKIERAAVPLGFDVKINNFKMKLQGEKTGRKGHLSVATEIFQVAPSLYIVELRKAGGDTLEFHKFYSNLSTGLKDIVWRHGDKMGQEATG 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19954912 19959378 + MC01g1580 Mch1g2058 676950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g2058 449 SMART serkin_6 16 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g2058 449 Gene3D Kinase associated domain 1, KA1 313 438 - -
Mch1g2058 449 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524(InterPro)
Mch1g2058 449 ProSiteProfiles NAF domain profile. 313 337 IPR018451 GO:0007165(InterPro)
Mch1g2058 449 SUPERFAMILY Protein kinase-like (PK-like) 13 281 IPR011009 -
Mch1g2058 449 Pfam NAF domain 315 374 IPR004041 GO:0007165(InterPro)
Mch1g2058 449 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 8 422 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Mch1g2058 449 FunFam Non-specific serine/threonine protein kinase 9 312 - -
Mch1g2058 449 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g2058 449 FunFam Non-specific serine/threonine protein kinase 312 438 - -
Mch1g2058 449 Pfam Protein kinase domain 16 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g2058 449 FunFam Non-specific serine/threonine protein kinase 7 95 - -
Mch1g2058 449 ProSiteProfiles Protein kinase domain profile. 16 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g2058 449 Gene3D Transferase(Phosphotransferase) domain 1 96 279 - -
Mch1g2058 449 CDD STKc_SnRK3 15 270 - -
Mch1g2058 449 Gene3D Phosphorylase Kinase; domain 1 5 95 - -
Mch1g2058 449 CDD CIPK_C 319 434 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g2058 Mch-Chr1:19954912 Mch5g0519 Mch-Chr5:3443746 1.56E-228 dispersed
Mch5g0331 Mch-Chr5:2250620 Mch1g2058 Mch-Chr1:19954912 2.44E-55 transposed
Mch1g2058 Mch-Chr1:19954912 Mch3g0968 Mch-Chr3:13528969 1.10E-271 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77168 PF00069 Pkinase 1.00E-75 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g2058 - - - 0.0