Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g2064 ATGAGGCTTTCAACTGCTGGTTTTAGTCCTCAGGCCCCGGAAGGGGAAAGAAGAGTTCTTAACTCGGAGCTTTGGCATGCGTGTGCGGGTCCTCTTGTTTCTCTACCTGCTGTTGGAAGTCGCGTTGTTTATTTTCCACAGGGTCATAGTGAGCAGGTTGCCATATCAACCAACAAAGAAGTTGATGCTCATATACCTAGTTATCCAAGCTTGCCGCCGCAACTTATCTGTCAGCTTCACAATGTTACAATGCATGCAGATGTCGAGACGGATGAAGTGTATGCTCAGATGACCTTGCAACCGCTCAGTGCTCAAGAGCAAAAGGAGCCTTATCTTGCAGCTGAGTTGGGTGCTCCCAGCAAACAACCAACCAATTATTTTTGTAAGACATTGACAGCAAGTGACACGAGTACACATGGAGGATTTTCTGTTCCTCGCCGTGCTGCTGAGAAAGTGTTTCCTCCATTGGACTTCTCTCAACAGCCACCTGCTCAGGAGTTAATTGCAAGGGATCTTCACGACAATGAATGGAAATTTAGGCATATCTTTCGTGGTCAGCCCAAAAGGCATCTTCTTACAACTGGATGGAGTGTGTTTGTAAGTGCTAAGAGGCTTGTTGCTGGCGATTCCGTGATCTTTATTTGGAATGAAAAGAATCAATTACTGCTAGGAATCCGTCGAGCTAATCGACCACAGACAGTGATGCCTTCATCGGTTTTATCCAGTGACAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCCCATGCAGCTGCTACAAATAGTCGGTTCACAATATTTTATAATCCAAGGGCTAGCCCATCAGAGTTCATCATACCCCTGGCCAAGTATGTCAAAGCTGTGTACCATACCCGTGTTTCCGTCGGTATGCGTTTTAGAATGCTATTTGAAACTGAAGAATCAAGTGTTCGTCGTTATATGGGCACCATTACTGGCATCAGTGATTTAGATCCTGTTCGATGGCAAAACTCACACTGGCGCTCCGTTAAGGTTGGATGGGATGAATCTACGGCTGGGGAGAGACAGCCAAGGGTCTCCCTGTGGGAGATTGAGCCGCTAACAACCTTCCCAATGTATCCGTCTCCGTTTCCCCTTAGGCTTAAGCGACCGTGGCCCACTGGATTGCCCTCTTTTCACGGTCTCAAAGAGGACGATATGGGATTAAATTCTCAACTAATGTGGCTACGGGGAGATGGTCTAGATCGTGGAATTCAACCCCTGAACTTCCATGGACTCGGAGTTGCACCATGGATGCAGCCAAGGCTTGATGCTTCTATGGTAGGTTTGCAGCCGGAGATATATCAAGCAATGGCTGCTGCTGCACTACAGGAGATGAGAACCGTTGATCCCGCCAAAGCGCAGGCGGCTTCGCTTCTCCAGTTCCAACAGAACCCAAGTCTCCCCAACAGGCCTGCTACCTTCATGCCATCTCAGATGTTGCAGCAGCCTCATCCTCAGCCTCAACAGACCTTTCTTCAATCTGATCATGAAAACCAACATCTCTCTGTGTCACAGGCCCAAACCCAGACTTCTGTTCTTCAGCAGGAGATTAAGCATCAAACTTTTAACAACCACCACCAGCAGCCGCCACCACCGCCACAGCAGCAGCCGCAACCGCAACAGCAAGTTTTTGATCACCAACAAGTTCCAACCACAATGTCTTCAATGTCGCAGTTTGGTTCTGCATCGCAATCTCAAGCACAATCTCTGCAATCCATTCCTCCTTTGTGCCGGCAGCAAAGTTTTTCTGATTCAAATGCCAACCACGTGACGAGTCCCATGATTTCACCATTGCACAGCCTCTTAGGCTCATTTCCGCAAGATGAATCGTCTCAGTTGCTTAATCTGCCTAGAACCAATCCCATGATGCATTCATCTACATGGCCTTCGAAGAGAGCTGCAGTGGATCCTCTTCTCTCTTCTGGAAATTCTCAGTTTGTTCTTCCCCAGGGGGAAAATATGGGGACGACTCAGACTACTAATATCTCCCAGAATGCTATTTCATTGGCGCCGTTTCCTGGTAGAGAATGCTCATTAGATCAAGGGAATGGCGATCCGCAGAGCAATCTTCTCTTTGGTGTCAATATAGAGCCTTCCTCTCTTCTGTTGCAGAATGGCATGCCAAATCTTAGGGGAATTTGCAGTGACAGTGACTCAACAGCTATACCTTTTTCATCCAATTATGTGAACCCTGCTGGTACCAACTTCTCTGCAAATCCAGCCGGGACACCTTCAAATTGCATTGAGGATTCGGGTTTCTTGCAGTCTCCAGAAAACACAGGCCAAGTAAACCCACCAACCAGAACCTTTGTAAAGGTTTACAAGTCGGGGTCCTTCGGTAGATCACTGGATATTTCCAAATTCAGTAGCTACCATCAGTTACGCAGTGAGCTCGCTCACATGTTCAGCCTTGAAGGCGAGTTGGAGGACCCTTTGAGATCAGGCTGGCAGCTTGTATTTGTTGACAGGGAAAATGACGTCCTTCTTCTTGGGGATGATCCCTGGCCGGAGTTCGTCAACAGCGTGTGGTGCATCAAAATACTCTCACCACAGGAAGTGCAGGAGATGGGCAAACGAGGCCTAGAGCTCTTGAACTCAGTACCGATTCAGAGGCTCTCGAATGGCAGTTGTGATAACTATGCCAACAGACAGGAGTCATCCAGAAATTTGAGTACCGGTATAACTTCGGTCGGGTCGCTCGAGTACTGA 2727 48.07 MRLSTAGFSPQAPEGERRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAISTNKEVDAHIPSYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSAQEQKEPYLAAELGAPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLPSFHGLKEDDMGLNSQLMWLRGDGLDRGIQPLNFHGLGVAPWMQPRLDASMVGLQPEIYQAMAAAALQEMRTVDPAKAQAASLLQFQQNPSLPNRPATFMPSQMLQQPHPQPQQTFLQSDHENQHLSVSQAQTQTSVLQQEIKHQTFNNHHQQPPPPPQQQPQPQQQVFDHQQVPTTMSSMSQFGSASQSQAQSLQSIPPLCRQQSFSDSNANHVTSPMISPLHSLLGSFPQDESSQLLNLPRTNPMMHSSTWPSKRAAVDPLLSSGNSQFVLPQGENMGTTQTTNISQNAISLAPFPGRECSLDQGNGDPQSNLLFGVNIEPSSLLLQNGMPNLRGICSDSDSTAIPFSSNYVNPAGTNFSANPAGTPSNCIEDSGFLQSPENTGQVNPPTRTFVKVYKSGSFGRSLDISKFSSYHQLRSELAHMFSLEGELEDPLRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQEMGKRGLELLNSVPIQRLSNGSCDNYANRQESSRNLSTGITSVGSLEY 908
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20009579 20016293 - MC01g_new0479 Mch1g2064 676956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g2064 908 MobiDBLite consensus disorder prediction 470 516 - -
Mch1g2064 908 FunFam Auxin response factor 291 363 - -
Mch1g2064 908 Pfam AUX/IAA family 771 863 IPR033389 -
Mch1g2064 908 CDD B3_DNA 126 227 IPR003340 GO:0003677(InterPro)
Mch1g2064 908 SMART B3_2 127 229 IPR003340 GO:0003677(InterPro)
Mch1g2064 908 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 865 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Mch1g2064 908 Pfam Auxin response factor 253 335 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Mch1g2064 908 MobiDBLite consensus disorder prediction 528 579 - -
Mch1g2064 908 Gene3D - 125 228 IPR015300 -
Mch1g2064 908 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677(InterPro)
Mch1g2064 908 ProSiteProfiles PB1 domain profile. 774 858 IPR053793 -
Mch1g2064 908 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Mch1g2064 908 MobiDBLite consensus disorder prediction 545 579 - -
Mch1g2064 908 Gene3D - 771 863 - -
Mch1g2064 908 FunFam Auxin response factor 769 863 - -
Mch1g2064 908 SUPERFAMILY CAD & PB1 domains 766 849 - -
Mch1g2064 908 Gene3D - 291 363 - -
Mch1g2064 908 FunFam Auxin response factor 125 229 - -
Mch1g2064 908 Pfam B3 DNA binding domain 127 229 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g2064 Mch-Chr1:20009579 Mch2g0367 Mch-Chr2:2735698 1.32E-106 dispersed
Mch10g0906 Mch-Chr10:6405045 Mch1g2064 Mch-Chr1:20009579 1.33E-113 transposed
Mch11g0134 Mch-Chr11:866468 Mch1g2064 Mch-Chr1:20009579 7.97E-197 transposed
Mch1g1903 Mch-Chr1:18958090 Mch1g2064 Mch-Chr1:20009579 2.84E-102 transposed
Mch4g1648 Mch-Chr4:19671306 Mch1g2064 Mch-Chr1:20009579 0 transposed
Mch6g0012 Mch-Chr6:110952 Mch1g2064 Mch-Chr1:20009579 1.99E-118 transposed
Mch6g2320 Mch-Chr6:25135217 Mch1g2064 Mch-Chr1:20009579 6.94E-113 transposed
Mch8g2596 Mch-Chr8:29101355 Mch1g2064 Mch-Chr1:20009579 1.72E-191 transposed
Mch8g3259 Mch-Chr8:34534366 Mch1g2064 Mch-Chr1:20009579 5.15E-197 transposed
Mch1g2064 Mch-Chr1:20009579 Mch3g0963 Mch-Chr3:13472960 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42822 PF02309 AUX_IAA 1.40E-07 CL0072 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g2064 K14486 - csv:101210406 1622.45