Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g2089 ATGGCGCTTGTAATGCACAAGGATTCATCAAATAAACAGATGGATACGAGCAAATATGTAAGGTATACACCCGAACAGGTTGAGGCATTAGAGAGAGTTTACTCAGAATGTCCAAAGCCCAGCTCTCTGAGAAGGCAGCAGCTCATTAGGGAGTGCCCAATCCTCTCTAACATTGAGCCAAAACAGATCAAAGTTTGGTTTCAAAATCGCAGATGCCGTGAGAAGCAGAGGAAGGAATCTTCCCGCCTCCAGAGCGTAAATCGAAAGTTGTCTGCAATGAACAAATTGTTGATGGAAGAGAATGACCGTTTACAGAAGCAGGTGTCCCATTTGGTTTATGAGAATGGGTATATGCGCCAGCAACTGCATAGTGCATCTGGGACGACTACAGACAATAGCTGTGAGTCTGTAGTCATGAGCGGTCAGCCCCAACAACAGCAAAACCCAAATCCTCAGCATCCCAATAGGGATGTCAACAACCCAGCTGGTCTTCTTGCGGTAGCTGAGGAGACCCTGGCAGAGTTCCTTTCCAAGGCTACAGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAACTGCAGTGGGGTAGCAGCACGAGCCTGTGGTCTTGTTAGTCTAGAGCCAACAAAGGTTGCGGAAATTCTTAAAGATCGCCTTTCATGGTATCGTGACTGCCGTTGTCTTAATGTTTTAAGTGTAGTCCCTACTGGAAATGGGGGAACAATAGAGCTCATATATATGCAGACTTATGCGCCAACAACGTTAGCAGCTGCACGTGACTTCTGGACGATGAGATATACAACAAGTTTAGAAGATGGCAGTCTAGTGGTATGTGAGAGGTCACTGACTTCTTCAAGTGGTGGCCCAGCAGGGCCTCCGCCATCTAGTTTTGTGAGAGCTGAAATGCTTCCTAGTGGCTATTTAATACGAGCGTGTGAGGGCGGTGGATCCATTATTCACATTGTTGATCACATTGATTTGGATGTTTGGAGTGTCCCTGAAGTTCTTAGGCCACTTTACGAGTCATCCAAGATCCTTGCTCAGAAAATGACAGTTGCTGCATTACGTCACATAAGGCAAATTGCTCAAGAGACTAACGGAGAGATTCAACATAGCGGTGGACGTCAACCAGCGGTATTGCGGACATTCAGTCAAAAACTGTGCAGGGGTTTCAATGACGCTGTTAATGGGTTTGCGGATGATGGTTGGTCACCTTTGGGCAGTGACGGTTTGGAGGACGTGACGATTGTCATAAACTCATCGCCAAACAAATTTCCTGGATCCCAGTATAACATGTCCATGTATCCCTCTTTCGGCGGAGGAGTGATGTGCGCAAAAGCATCGATGTTGCTTCAGAATGTTCCCCCTGCTTTGCTTGTTCGGTTCCTGAGAGAGCATCGGTCTGAATGGGCCGATTATGGGGTTGATGCCTACTCTGCTGCATGTCTAAAAGCCAGTCCATATGCTGTTCCATGTGCAAGACCTGGTGGCTTCCCAAGCAGCCAGGTCATCTTGCCTCTTGCTCATACTGTGGAGCACGAAGAGTTCTTGGAGGTGGTTCGTCTGGAGGGCCTTGCATTCTCCCCCGAAGATGTTGCTTTAGCTGGACGAGATATGTACTTATTGCAGCTCTGTAGTGGGGTTGATGAGAATGCAGTTGGAGCTTGTGCTCAGCTTGTGTTTGCTCCTATAGATGAATCATTTGCTGATGATGCCCCTCTACTTCCTTCTGGATTTCGTGTCATACCGCTGGATCCTAAAACGGATGAACCTACTGCTGCTCGAACTTTGGACTTGGCTTCTACTCTCGAAGTCGGTGCCAATGCTTCACGTCCTGCTGGTGAAACTGATCTGAGTAGCTACAATCTTCGGTCAGTCTTGACTATTGCCTTCCAGTTCACTTTCGAGAATCACATGCGCGACAATGTGGCTGCTATGGCCCGACAATATGTTCGCAGTGTTGTGGGGTCTGTTCAGAGGGTTGCCATGGCCATTGCCCCATCGCGGTTGAATTCCAATATGGGACTAAAGCCCCTTCCCGGTTCTCCTGAAGCTCTCACTTTAGCACGATGGATTTGCCGAAGTTACAGGATACACATAGGAGCTGAGCTTCTTCAAGCCGATTCCCAGTCTGGGGATGCCATGTTGAAGCAGCTCTGGCACCACTCAGATGCGATCATGTGTTGCTCCGTGAAAACCAATGCATCTGCTGTGTTCACCTTTGCTAACCAGGCTGGTCTGGACATGCTCGAAACCACTCTCGTAGGCCTGCAAGATATAATGCTTGATAAAATTCTCGACGAAGCAGGTCGGAAGATTCTCTGCTCAGAGTTCCCCAAAATAATGCAACAGGGATTTGCCAATCTGCCATCGGGTATTTGTGTATCGAGTATGGGCCGTCCCATTTCATACGAGCAAGCTGTTGCCTGGAAGGTTCTAAATGATGATGGTTCCAATCACTGCCTAGCTTTCATGTTCATAAACTGGTCGTTTGTGTGA 2544 48.11 MALVMHKDSSNKQMDTSKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQSVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSASGTTTDNSCESVVMSGQPQQQQNPNPQHPNRDVNNPAGLLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPTKVAEILKDRLSWYRDCRCLNVLSVVPTGNGGTIELIYMQTYAPTTLAAARDFWTMRYTTSLEDGSLVVCERSLTSSSGGPAGPPPSSFVRAEMLPSGYLIRACEGGGSIIHIVDHIDLDVWSVPEVLRPLYESSKILAQKMTVAALRHIRQIAQETNGEIQHSGGRQPAVLRTFSQKLCRGFNDAVNGFADDGWSPLGSDGLEDVTIVINSSPNKFPGSQYNMSMYPSFGGGVMCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKASPYAVPCARPGGFPSSQVILPLAHTVEHEEFLEVVRLEGLAFSPEDVALAGRDMYLLQLCSGVDENAVGACAQLVFAPIDESFADDAPLLPSGFRVIPLDPKTDEPTAARTLDLASTLEVGANASRPAGETDLSSYNLRSVLTIAFQFTFENHMRDNVAAMARQYVRSVVGSVQRVAMAIAPSRLNSNMGLKPLPGSPEALTLARWICRSYRIHIGAELLQADSQSGDAMLKQLWHHSDAIMCCSVKTNASAVFTFANQAGLDMLETTLVGLQDIMLDKILDEAGRKILCSEFPKIMQQGFANLPSGICVSSMGRPISYEQAVAWKVLNDDGSNHCLAFMFINWSFV 847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20268520 20274961 - MC01g1605 Mch1g2089 676981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g2089 847 ProSiteProfiles START domain profile. 157 385 IPR002913 GO:0008289(InterPro)
Mch1g2089 847 CDD START_ArGLABRA2_like 161 377 - -
Mch1g2089 847 SUPERFAMILY Homeodomain-like 18 79 IPR009057 -
Mch1g2089 847 SMART START_1 166 376 IPR002913 GO:0008289(InterPro)
Mch1g2089 847 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677(InterPro)
Mch1g2089 847 MobiDBLite consensus disorder prediction 123 160 - -
Mch1g2089 847 SUPERFAMILY Bet v1-like 167 378 - -
Mch1g2089 847 Pfam START domain 167 374 IPR002913 GO:0008289(InterPro)
Mch1g2089 847 Pfam MEKHLA domain 702 846 IPR013978 -
Mch1g2089 847 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 12 847 IPR044830 GO:0003700(InterPro)
Mch1g2089 847 MobiDBLite consensus disorder prediction 123 157 - -
Mch1g2089 847 Pfam Homeodomain 18 76 IPR001356 GO:0003677(InterPro)
Mch1g2089 847 CDD bZIP 70 109 - -
Mch1g2089 847 Gene3D - 9 85 - -
Mch1g2089 847 SMART HOX_1 15 81 IPR001356 GO:0003677(InterPro)
Mch1g2089 847 Coils Coil 83 107 - -
Mch1g2089 847 CDD homeodomain 18 78 IPR001356 GO:0003677(InterPro)
Mch1g2089 847 Gene3D - 200 386 IPR023393 -
Mch1g2089 847 FunFam Homeobox-leucine zipper protein REVOLUTA 18 73 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g2089 Mch-Chr1:20268520 Mch2g0351 Mch-Chr2:2628845 0 dispersed
Mch11g0764 Mch-Chr11:5156299 Mch1g2089 Mch-Chr1:20268520 0 transposed
Mch9g0310 Mch-Chr9:2330285 Mch1g2089 Mch-Chr1:20268520 0 transposed
Mch1g2089 Mch-Chr1:20268520 Mch3g0939 Mch-Chr3:13279452 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42824 PF01852 START 2.80E-50 CL0209 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g2089 K09338 - csv:101210154 1618.21