Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g2090 ATGACTTCTTCTGTCCACGATTATTCTGATAATGGTGAGGCTGATGAGCAGCAAAAGTACTCAGAATCTCAGAATCATTCTTTATCTGTCATAAATGGACTGAATCAACCCAGCATCCCAACCCCAAATCAGTATGTAACACCTCCACAAGTTGGCGCAGGACATGCTATGGCACCCCCAGCTTATCCATATCCAGATCCTTACTACAGAAGCATCTTCACTCCCTATGATGCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCTATGGTCCATCTTCAACTAATGGGAATTCAGCAAGCTGGGGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTGAATGCTAAACAGTATCATGGCATTTTACGACGTCGACAGTCCCGTGCAAAAGCTGAATCAGAAAATAAAGCTTTGAAGTCTAGGAAGCCATACTTGCATGAATCTCGACATTTGCATGCATTGAGGAGAGCTAGAGGTTGTGGTGGACGGTTTCTCAAATCAAATAAAAAAGAAAATCAACAAAATGAAGTGGCATCAGGTGGTAAATCTCAGCCCAATATAAATCTGAATTCTGATAAAAGTGATCTTGCTTCTTCAGAGAACTGA 618 42.72 MTSSVHDYSDNGEADEQQKYSESQNHSLSVINGLNQPSIPTPNQYVTPPQVGAGHAMAPPAYPYPDPYYRSIFTPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKKENQQNEVASGGKSQPNINLNSDKSDLASSEN 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20281816 20290594 - MC01g1606 Mch1g2090 676982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g2090 205 ProSiteProfiles NF-YA/HAP2 family profile. 111 171 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g2090 205 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 113 168 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g2090 205 Gene3D - 111 172 - -
Mch1g2090 205 MobiDBLite consensus disorder prediction 130 149 - -
Mch1g2090 205 SMART cbf3 110 171 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g2090 205 ProSitePatterns NF-YA/HAP2 subunit signature. 116 136 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Mch1g2090 205 MobiDBLite consensus disorder prediction 171 205 - -
Mch1g2090 205 PRINTS CCAAT-binding transcription factor subunit B signature 114 136 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g2090 205 PRINTS CCAAT-binding transcription factor subunit B signature 145 168 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g2090 205 MobiDBLite consensus disorder prediction 162 205 - -
Mch1g2090 205 MobiDBLite consensus disorder prediction 1 60 - -
Mch1g2090 205 MobiDBLite consensus disorder prediction 21 48 - -
Mch1g2090 205 MobiDBLite consensus disorder prediction 130 148 - -
Mch1g2090 205 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 11 197 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g2090 Mch-Chr1:20281816 Mch2g0147 Mch-Chr2:1108745 9.82E-32 dispersed
Mch1g2090 Mch-Chr1:20281816 Mch9g0559 Mch-Chr9:4082808 2.21E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42825 PF02045 CBFB_NFYA 4.20E-26 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g2090 K08064 - csv:101205549 352.058