Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g2090 ATGACTTCTTCTGTCCACGATTATTCTGATAATGGTGAGGCTGATGAGCAGCAAAAGTACTCAGAATCTCAGAATCATTCTTTATCTGTCATAAATGGACTGAATCAACCCAGCATCCCAACCCCAAATCAGTATGTAACACCTCCACAAGTTGGCGCAGGACATGCTATGGCACCCCCAGCTTATCCATATCCAGATCCTTACTACAGAAGCATCTTCACTCCCTATGATGCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCTATGGTCCATCTTCAACTAATGGGAATTCAGCAAGCTGGGGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTGAATGCTAAACAGTATCATGGCATTTTACGACGTCGACAGTCCCGTGCAAAAGCTGAATCAGAAAATAAAGCTTTGAAGTCTAGGAAGCCATACTTGCATGAATCTCGACATTTGCATGCATTGAGGAGAGCTAGAGGTTGTGGTGGACGGTTTCTCAAATCAAATAAAAAAGAAAATCAACAAAATGAAGTGGCATCAGGTGGTAAATCTCAGCCCAATATAAATCTGAATTCTGATAAAAGTGATCTTGCTTCTTCAGAGAACTGA 618 42.72 MTSSVHDYSDNGEADEQQKYSESQNHSLSVINGLNQPSIPTPNQYVTPPQVGAGHAMAPPAYPYPDPYYRSIFTPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKKENQQNEVASGGKSQPNINLNSDKSDLASSEN 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20281816 20290594 - MC01g1606 Mch1g2090 676982

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g2090 205 ProSiteProfiles NF-YA/HAP2 family profile. 111 171 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g2090 205 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 113 168 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g2090 205 Gene3D - 111 172 - -
Mch1g2090 205 MobiDBLite consensus disorder prediction 130 149 - -
Mch1g2090 205 SMART cbf3 110 171 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g2090 205 ProSitePatterns NF-YA/HAP2 subunit signature. 116 136 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Mch1g2090 205 MobiDBLite consensus disorder prediction 171 205 - -
Mch1g2090 205 PRINTS CCAAT-binding transcription factor subunit B signature 114 136 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g2090 205 PRINTS CCAAT-binding transcription factor subunit B signature 145 168 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g2090 205 MobiDBLite consensus disorder prediction 162 205 - -
Mch1g2090 205 MobiDBLite consensus disorder prediction 1 60 - -
Mch1g2090 205 MobiDBLite consensus disorder prediction 21 48 - -
Mch1g2090 205 MobiDBLite consensus disorder prediction 130 148 - -
Mch1g2090 205 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 11 197 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g2090 K08064 - - csv:101205549 352.058
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g2090 Mch-Chr1:20281816 Mch2g0147 Mch-Chr2:1108745 9.82E-32 dispersed
Mch1g2090 Mch-Chr1:20281816 Mch9g0559 Mch-Chr9:4082808 2.21E-32 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch2g0147 . 29 284 CCAAT-HAP2 Transcription Factor Family AT5G12840 52.3 9.7e-57 217.2
Mch2g0147 . 116 356 CCAAT-HAP2 Transcription Factor Family AT3G20910 51.7 2.6e-50 196.1
Mch6g1159 . 3 239 CCAAT-HAP2 Transcription Factor Family AT3G20910 53.3 5.4e-48 188.3
Mch1g2090 . 1 203 CCAAT-HAP2 Transcription Factor Family AT1G30500 55.7 3.4e-48 188.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004501 2 1 2 2 2 1 2 1 1 1 1 2 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42825 PF02045 CBFB_NFYA 4.20E-26 No_clan Mch TF