Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g2092 ATGAATAATCATTCAATGGAACTTGGGAGGCCTGCCTCAGGCAAAAGAAGGTTAAGGGACCTATTGCTTCAAAGGGATAATCGCGTCTGTGCAGATTGTTGTGCTTCAGATCCTAAATGGGCTTCAGCAAATATTGGAGTTTTTATATGCTTGAAATGTTGTGGTGTTCACAGAAGTCTTGGTTCTCATATATCAAAGGTGTTATCAGTGACGTTGGATGAATGGAGTGAGGATGAAATTGATGCCATGGTAGAGGTTGGAGGAAATTCTTCAGCAAATTCAATTTACGAAGCCTTTATTCCTGAAGGATATACAAAACCTGGACCAGATGCCACCCATGAAAAACGTTCAAAATTTATTCGGTCCAAATATGAACTTCAAGAATTTCTGAAACCGAGCTTAAGAATTTTATCATCCAACTCTGACAAAAGCAATATCCAAGCAAACTTTTCTGCAAAGATCATGAATAGTTTTCGTTCAAAGTCTTCACAGAAATCAGCAGGTATGGTGGAGTTCATTGGATTATTGAAGGTCAAAGTGATTAAAGGGACAGACTTAGCTATCAGGGACATGATGTCGAGTGACCCTTATGTTGTTTTGACTCTTGGACAACAGACTGTTCAGACAACTATAGTCAAGAGCAACTTAAATCCTGTGTGGAATGAGGATCTCATGCTATCTGTACCTCAATGTTTTGGGACCTTAAAGTTGCAAGTATACGATTATGACACATTTTCAGCAGACGACATAATGGGAGAAGCAGAAATCGATCTTCAGCCCTTAATAACATCCGCAATGGCATTTGGAGATGCTGGATTGTTTTCAAATATGCAAATTGGAAAATGGCTGAAATCACACGATAATGCTCTCATAACCGATAGTACTGTTAATATTGTTGATGGCAAGGTGAAGCAAGAGATATCACTCAAGCTTCAGAATGTGGAATCAGGAGAACTAGATCTAGAGCTAGAATGGATGCCTCTTGAACAATAG 993 39.07 MNNHSMELGRPASGKRRLRDLLLQRDNRVCADCCASDPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDEWSEDEIDAMVEVGGNSSANSIYEAFIPEGYTKPGPDATHEKRSKFIRSKYELQEFLKPSLRILSSNSDKSNIQANFSAKIMNSFRSKSSQKSAGMVEFIGLLKVKVIKGTDLAIRDMMSSDPYVVLTLGQQTVQTTIVKSNLNPVWNEDLMLSVPQCFGTLKLQVYDYDTFSADDIMGEAEIDLQPLITSAMAFGDAGLFSNMQIGKWLKSHDNALITDSTVNIVDGKVKQEISLKLQNVESGELDLELEWMPLEQ 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20297906 20304911 + MC01g1608 Mch1g2092 676984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g2092 330 CDD C2_ArfGAP 173 317 - -
Mch1g2092 330 ProSiteProfiles C2 domain profile. 159 271 IPR000008 -
Mch1g2092 330 Gene3D Arf GTPase activating protein 2 135 IPR038508 -
Mch1g2092 330 SMART C2_3c 175 270 IPR000008 -
Mch1g2092 330 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 143 IPR001164 GO:0005096(InterPro)
Mch1g2092 330 SMART arf_gap_3 15 137 IPR001164 GO:0005096(InterPro)
Mch1g2092 330 Pfam C2 domain 174 262 IPR000008 -
Mch1g2092 330 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 174 319 IPR035892 -
Mch1g2092 330 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 1 330 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Mch1g2092 330 Gene3D C2 domain 172 330 IPR035892 -
Mch1g2092 330 SUPERFAMILY ArfGap/RecO-like zinc finger 15 132 IPR037278 -
Mch1g2092 330 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 172 330 - -
Mch1g2092 330 Pfam Putative GTPase activating protein for Arf 16 131 IPR001164 GO:0005096(InterPro)
Mch1g2092 330 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096(InterPro)
Mch1g2092 330 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096(InterPro)
Mch1g2092 330 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096(InterPro)
Mch1g2092 330 CDD ArfGap 27 124 - -
Mch1g2092 330 FunFam Arf-GAP with dual PH domain-containing protein 1 10 138 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g2092 Mch-Chr1:20297906 Mch3g1585 Mch-Chr3:17807303 6.06E-41 dispersed
Mch4g1592 Mch-Chr4:19168577 Mch1g2092 Mch-Chr1:20297906 3.48E-115 transposed
Mch6g2691 Mch-Chr6:28589977 Mch1g2092 Mch-Chr1:20297906 7.53E-09 transposed
Mch9g1741 Mch-Chr9:19382350 Mch1g2092 Mch-Chr1:20297906 7.55E-107 transposed
Mch11g1113 Mch-Chr11:7766489 Mch1g2092 Mch-Chr1:20297906 2.66E-25 transposed
Mch1g2092 Mch-Chr1:20297906 Mch3g0937 Mch-Chr3:13250318 6.70E-170 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g2092 K12486 - csv:101218116 582.408