Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch1g2098 | GACTATATCGTTGCCAAAGAACGACATGTCCACGACCACAAGCTGGGGCTCTTTGCAATATTCGACGGCCACTCTGGTCGTGATGTTGCAGAGTACTTGCAGAGCCATCTGGTTGGTAAAATCTTAAGCCAGTTTGATTTCTGGGAAGGCCCTAAAGGAGCAATCAGGAGGGCATATAAAGCAACAGACGTTGAGATTTTGGCCAAAAAAGTGAGAAGCAGAGTAGGCTCAACAGCAGTCACAGCTATACTAATTGATGGACAGAAGCTAATTGTTGCAAACGTTGGCGACTCATGGGTGGTGCTATGCAGAAATGGCTTGGTGAACCGATTACTCAATCATGAACTAGAGATGGAGAAGGAGATTGTCGAGAGCCAAGGCGGATTCGTTGCACAAATGCCAGGAAATGTGGCACGGGTGGATGGTCAGCTAGCAATGTCAAGGGCATTTGGAGATGCAAAGCTCAAAGAACACATTACTTCAGAACCAGATATCAGGATCGTGACCATTGACAATCGGGCTGAGTTCACCATTTTGGCCAGTGATGGCCTCTGGAAGATTCATTACTCTTGCCCATTTGTGATGTCAAACCAGGAGGCTTGCGATTTCATCAGAGAAATGGCTATGGATGCTCAAGAGGTTGCAGAGGAGTTGATCAACGAGGCATTATCTCGGAAGAGCAACGATGACATTTCCTGTATTGTTGTTACCTTCCAC | 717 | 46.58 | DYIVAKERHVHDHKLGLFAIFDGHSGRDVAEYLQSHLVGKILSQFDFWEGPKGAIRRAYKATDVEILAKKVRSRVGSTAVTAILIDGQKLIVANVGDSWVVLCRNGLVNRLLNHELEMEKEIVESQGGFVAQMPGNVARVDGQLAMSRAFGDAKLKEHITSEPDIRIVTIDNRAEFTILASDGLWKIHYSCPFVMSNQEACDFIREMAMDAQEVAEELINEALSRKSNDDISCIVVTFH | 239 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 20339398 | 20340570 | - | MC01g1614 | Mch1g2098 | 676990 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch1g2098 | 239 | Gene3D | - | 1 | 239 | IPR036457 | - | |
| Mch1g2098 | 239 | SUPERFAMILY | PP2C-like | 8 | 239 | IPR036457 | - | |
| Mch1g2098 | 239 | SMART | PP2C_4 | 1 | 236 | IPR001932 | - | |
| Mch1g2098 | 239 | CDD | PP2Cc | 1 | 238 | IPR001932 | - | |
| Mch1g2098 | 239 | ProSiteProfiles | PPM-type phosphatase domain profile. | 1 | 238 | IPR001932 | - | |
| Mch1g2098 | 239 | FunFam | Probable protein phosphatase 2C 39 | 1 | 239 | - | - | |
| Mch1g2098 | 239 | PANTHER | PROTEIN PHOSPHATASE | 3 | 236 | IPR015655 | GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
| Mch1g2098 | 239 | Pfam | Protein phosphatase 2C | 11 | 231 | IPR001932 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch11g1054 | Mch-Chr11:7341252 | Mch1g2098 | Mch-Chr1:20339398 | 3.55E-82 | dispersed | |
| Mch1g2098 | Mch-Chr1:20339398 | Mch4g1826 | Mch-Chr4:21120484 | 9.39E-43 | dispersed | |
| Mch1g2098 | Mch-Chr1:20339398 | Mch4g0141 | Mch-Chr4:940150 | 1.46E-86 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch1g2098 | K14803 | - | csv:101211141 | 342.428 |