Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g2120 ATGGATTCAGCAAGGAGTTGGTTTCAGAAGTTCCATCATAAAGTAAAGAAGGAAACTGAAAATGACAGTGAGGTTCAAGATGTACCTTCAAGTGCAACGAAAGAGAAAGTTGAGGTTGCCAAGCAATATATTGAAAACCATTACAAATCTCAAATGAAGTCATTGCAAGATCGCAAGGAGAGACGTTGGGTGTTGGAGAGGAGGCTTGCTGATGCGGATGTTTCTGCAGAAGACCAAATGAACGTGCTTAAATATTTAGAACAGAAGGAGACAGAATACATGCGTCTTCGTAGACATAAAATGGGCGTTGGTGACTTTGAACTTTTGACAATTATAGGAAGGGGTGCATTTGGGGAGGTTAGACTTTGTAGAGAAAAAGCCACGGGTCACGTGTATGCAATGAAGAAGCTTAAGAAATCTGAGATGCTTCGCAGAGGCCAGGTGGAACATGTCAAAGCTGAAAGAAATCTTCTAGCAGAGGTTGACAGTGCCTACATTGTGAAGTTATACTGCTCCTTTCAGGATGAAGATTTTTTGTATCTTATAATGCAATATCTTCCCGGAGGTGATATGATGACCCTGTTAATGCGCAAGGACACCTTGTCGGAGGATGAGGCTAGATTTTACGTTGGGGAAACAGTCCTTGCTATAGAGTCCATTCACAAGCATAATTACATTCACAGAGACATCAAGCCTGACAATTTACTGCTTGATCGTTATGGCCACATTAAACTCTCAGATTTTGGGTTGTGTAAACCCTTGGAGTCTAGTAGTTTCCCTAATCTCACTGAGCAAGAAAATGTAACGGGGAAGAATGTCAGATCTTCCATGGAAAATGATAATCAGTTTGGTTCACTCTCTGTATCAAAACGGACACAGCAAGAACAATTGTTACATTGGCAGAAGAACAGACGAACGTTGGCCTATTCAGCTGTTGGAACTCCAGACTATATTGCCCCAGAAGTGTTATTGAGGAAAGGATATGGAATGGAGTGTGACTGGTGGTCCCTAGGCGCAATTATGTATGAAATGCTCGTGGGATTTCCACCTTTCTATTCTGATGATCCGATGTCTACATGTAGGAAGATTATTAACTGGAGAACGCATCTGAGATTCCCATCGGAAGCAAAGCTTTCTATTGAGGCTAAAGATCTTATTTGCAAACTTCTATGCAATGTCGAGCAAAGAATTGGAACCAAAGGAGCAAAAGAAATTAAGGCGCACCCATGGTTTAAAGGTATACAATGGGATAAATTATATCAAATGGAAGCTGTCATCACCCCGGAGATCCATGATGAGTTAGATACTCAAAATTTTGAGAAGTTTGAAGAGCTGGGTGTGCCAGGTCAAACTGCATCAAAATCGGGTTCTGGGAGAAAGGCAACATTTGTTGTTCTGCAGATGCTTTCGCCCAAGGATGTGAACTTTGTTGGTTATACATACAAGAATTTTGAAATTGTTAACGAACACCACTTGTCTGGCATCACTGAGATGAGGAAAAAGCCTAACAAGACCAAGAGACCATCTATTACGACTCTATTTGGCACAGCGGATTCTCCAGAGCAGCCCGGTGAAAGAGGTTTTCCAAATCATTTGTCGACCCATCTGGAAGTCTCAGAAAGCCCTGATCCATCACCTCGTTCAACTGGATCACTGCAACAGGCGAAGCGTTGGGGGAGATGA 1683 42.19 MDSARSWFQKFHHKVKKETENDSEVQDVPSSATKEKVEVAKQYIENHYKSQMKSLQDRKERRWVLERRLADADVSAEDQMNVLKYLEQKETEYMRLRRHKMGVGDFELLTIIGRGAFGEVRLCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSAYIVKLYCSFQDEDFLYLIMQYLPGGDMMTLLMRKDTLSEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRYGHIKLSDFGLCKPLESSSFPNLTEQENVTGKNVRSSMENDNQFGSLSVSKRTQQEQLLHWQKNRRTLAYSAVGTPDYIAPEVLLRKGYGMECDWWSLGAIMYEMLVGFPPFYSDDPMSTCRKIINWRTHLRFPSEAKLSIEAKDLICKLLCNVEQRIGTKGAKEIKAHPWFKGIQWDKLYQMEAVITPEIHDELDTQNFEKFEELGVPGQTASKSGSGRKATFVVLQMLSPKDVNFVGYTYKNFEIVNEHHLSGITEMRKKPNKTKRPSITTLFGTADSPEQPGERGFPNHLSTHLEVSESPDPSPRSTGSLQQAKRWGR 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20448907 20456979 - MC01g1624 Mch1g2120 677012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g2120 560 FunFam Non-specific serine/threonine protein kinase 310 429 - -
Mch1g2120 560 PANTHER SERINE/THREONINE-PROTEIN KINASE 27 486 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Mch1g2120 560 SMART pkinase_C_6 412 483 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g2120 560 Gene3D Phosphorylase Kinase; domain 1 104 189 - -
Mch1g2120 560 Gene3D Phosphorylase Kinase; domain 1 430 440 - -
Mch1g2120 560 ProSiteProfiles Protein kinase domain profile. 106 411 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g2120 560 CDD MobB_NDR_LATS-like 40 101 - -
Mch1g2120 560 Gene3D Transferase(Phosphotransferase) domain 1 305 429 - -
Mch1g2120 560 Gene3D Transferase(Phosphotransferase) domain 1 190 258 - -
Mch1g2120 560 FunFam Non-specific serine/threonine protein kinase 190 257 - -
Mch1g2120 560 SUPERFAMILY Protein kinase-like (PK-like) 86 461 IPR011009 -
Mch1g2120 560 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g2120 560 MobiDBLite consensus disorder prediction 534 560 - -
Mch1g2120 560 ProSiteProfiles AGC-kinase C-terminal domain profile. 412 491 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g2120 560 Pfam Protein kinase C terminal domain 431 481 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g2120 560 ProSitePatterns Protein kinases ATP-binding region signature. 112 135 IPR017441 GO:0005524(InterPro)
Mch1g2120 560 SMART serkin_6 106 411 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g2120 560 FunFam Non-specific serine/threonine protein kinase 77 189 - -
Mch1g2120 560 CDD STKc_NDR_like 105 482 - -
Mch1g2120 560 Pfam Protein kinase domain 308 411 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g2120 560 Pfam Protein kinase domain 107 259 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g2120 560 MobiDBLite consensus disorder prediction 497 560 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g2120 Mch-Chr1:20448907 Mch7g0952 Mch-Chr7:13933984 1.16E-276 dispersed
Mch1g2120 Mch-Chr1:20448907 Mch11g0433 Mch-Chr11:2716606 6.81E-226 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77170 PF00069 Pkinase 4.50E-64 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g2120 K08790 - csv:101208438 1002.66