Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g2155 ATGGGAAGAGGAAAAATCGCAATCAAGAGGATCGAGAACCGGACGACAAGGCAAGTTACTTTCTCGAAGCGGCGAGCTGGGCTTTTCAAGAAGACTCATGAACTCTCCGTTCTGTGCGACGCTCAGATCGGACTCATCGTCTTCTCCAGCAACGGAAAGTGCTTCGAATACTGCTCCCAACCAACTTGCATGGATCAAATCATAAAAAGGTATCAGATTTCACTGGCCGGGAGCCGAGCTCCGGACCGGCTGCACGACGGCAACGACCCGGACCCGGAAGAACTGGCGAGCCAAATTCGGAAAATGAGAAAAGAGACGGAGGAGCTTCAGGTGAGATTGCAGCGGTACACGGGGGAGGATCTCAGCGCCATTCAGCTCCGCGATTTGGATGAAATGGACCACCGTCTCCAAAACTCTCTCAATCGAGTTCGTGCCAGGAAGTCTGAGCTGTTTCAGCAGCAAATGGACAATCTCAAGAGAAAGGAGAAAATTCTGGAGGATGAAAATGAGCAAATATATCATATGATAAAAGAGCAGCAGATGGCGGCGGCGATGATGCAGAAGAGCGAAGAGGAACAGATGATGAGCAGCCACGTAGACATGAACCAGCAGCACCAGCAGATGCATGACTTTATCCCATTCCCGCTCCATCCTCAGCTTCAACTTCAAGTTCAAGTCCAACAAGCTGATCAAGATCATGAGGCCGATGAGCCCAGCAGCGTGCTCCAGCTGGCCCCGCTGCAGCCGCCGCCGTCGCCCTTCCACCCCTTCCGCCTCCAGCTCCAGCCCATCCAACCAAACCTCCAGGACTTCAACCTCCATTCCTCCACCACCACCTACGGAGCGATGGATGGGGGCCGGGGGTTTGGACACACTGCATTCGGGACGATATTCATCTTCATCTTGCTGGTGACTGTTGACTGTTGA 927 53.18 MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEYCSQPTCMDQIIKRYQISLAGSRAPDRLHDGNDPDPEELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQMDNLKRKEKILEDENEQIYHMIKEQQMAAAMMQKSEEEQMMSSHVDMNQQHQQMHDFIPFPLHPQLQLQVQVQQADQDHEADEPSSVLQLAPLQPPPSPFHPFRLQLQPIQPNLQDFNLHSSTTTYGAMDGGRGFGHTAFGTIFIFILLVTVDC 308
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 20720472 20722210 - MC01g1657 Mch1g2155 677047
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mch1g2155 308 SUPERFAMILY SRF-like 2 72 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch1g2155 308 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Mch1g2155 308 Coils Coil 99 119 - -
Mch1g2155 308 Gene3D - 14 75 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch1g2155 308 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch1g2155 308 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch1g2155 308 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 205 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Mch1g2155 308 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch1g2155 308 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch1g2155 308 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch1g2155 308 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch1g2155 308 Coils Coil 148 175 - -
Mch1g2155 308 ProSiteProfiles K-box domain profile. 92 182 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch1g2155 308 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch1g2155 308 Pfam K-box region 93 176 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0856 Mch-Chr11:5833313 Mch1g2155 Mch-Chr1:20720472 3.19E-34 dispersed
Mch1g2155 Mch-Chr1:20720472 Mch8g2369 Mch-Chr8:26813819 6.22E-38 dispersed
Mch1g2155 Mch-Chr1:20720472 Mch3g1677 Mch-Chr3:18407785 8.96E-38 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42830 PF01486 K-box 5.90E-19 No_clan Mch TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g2155 - - - 0.0