Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch1g2155 | ATGGGAAGAGGAAAAATCGCAATCAAGAGGATCGAGAACCGGACGACAAGGCAAGTTACTTTCTCGAAGCGGCGAGCTGGGCTTTTCAAGAAGACTCATGAACTCTCCGTTCTGTGCGACGCTCAGATCGGACTCATCGTCTTCTCCAGCAACGGAAAGTGCTTCGAATACTGCTCCCAACCAACTTGCATGGATCAAATCATAAAAAGGTATCAGATTTCACTGGCCGGGAGCCGAGCTCCGGACCGGCTGCACGACGGCAACGACCCGGACCCGGAAGAACTGGCGAGCCAAATTCGGAAAATGAGAAAAGAGACGGAGGAGCTTCAGGTGAGATTGCAGCGGTACACGGGGGAGGATCTCAGCGCCATTCAGCTCCGCGATTTGGATGAAATGGACCACCGTCTCCAAAACTCTCTCAATCGAGTTCGTGCCAGGAAGTCTGAGCTGTTTCAGCAGCAAATGGACAATCTCAAGAGAAAGGAGAAAATTCTGGAGGATGAAAATGAGCAAATATATCATATGATAAAAGAGCAGCAGATGGCGGCGGCGATGATGCAGAAGAGCGAAGAGGAACAGATGATGAGCAGCCACGTAGACATGAACCAGCAGCACCAGCAGATGCATGACTTTATCCCATTCCCGCTCCATCCTCAGCTTCAACTTCAAGTTCAAGTCCAACAAGCTGATCAAGATCATGAGGCCGATGAGCCCAGCAGCGTGCTCCAGCTGGCCCCGCTGCAGCCGCCGCCGTCGCCCTTCCACCCCTTCCGCCTCCAGCTCCAGCCCATCCAACCAAACCTCCAGGACTTCAACCTCCATTCCTCCACCACCACCTACGGAGCGATGGATGGGGGCCGGGGGTTTGGACACACTGCATTCGGGACGATATTCATCTTCATCTTGCTGGTGACTGTTGACTGTTGA | 927 | 53.18 | MGRGKIAIKRIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIGLIVFSSNGKCFEYCSQPTCMDQIIKRYQISLAGSRAPDRLHDGNDPDPEELASQIRKMRKETEELQVRLQRYTGEDLSAIQLRDLDEMDHRLQNSLNRVRARKSELFQQQMDNLKRKEKILEDENEQIYHMIKEQQMAAAMMQKSEEEQMMSSHVDMNQQHQQMHDFIPFPLHPQLQLQVQVQQADQDHEADEPSSVLQLAPLQPPPSPFHPFRLQLQPIQPNLQDFNLHSSTTTYGAMDGGRGFGHTAFGTIFIFILLVTVDC | 308 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 20720472 | 20722210 | - | MC01g1657 | Mch1g2155 | 677047 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch1g2155 | 308 | SUPERFAMILY | SRF-like | 2 | 72 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch1g2155 | 308 | CDD | MADS_MEF2_like | 2 | 72 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Mch1g2155 | 308 | Coils | Coil | 99 | 119 | - | - | |
Mch1g2155 | 308 | Gene3D | - | 14 | 75 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch1g2155 | 308 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch1g2155 | 308 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch1g2155 | 308 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 205 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Mch1g2155 | 308 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch1g2155 | 308 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch1g2155 | 308 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch1g2155 | 308 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch1g2155 | 308 | Coils | Coil | 148 | 175 | - | - | |
Mch1g2155 | 308 | ProSiteProfiles | K-box domain profile. | 92 | 182 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Mch1g2155 | 308 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch1g2155 | 308 | Pfam | K-box region | 93 | 176 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch11g0856 | Mch-Chr11:5833313 | Mch1g2155 | Mch-Chr1:20720472 | 3.19E-34 | dispersed | |
Mch1g2155 | Mch-Chr1:20720472 | Mch8g2369 | Mch-Chr8:26813819 | 6.22E-38 | dispersed | |
Mch1g2155 | Mch-Chr1:20720472 | Mch3g1677 | Mch-Chr3:18407785 | 8.96E-38 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42830 | PF01486 | K-box | 5.90E-19 | No_clan | Mch | TF |
Pathway information
