Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch1g2181 | ATGGGCCATCGCAGGCCCAAGCCCAGCACATCTGGAACACCCCTGGCCCTGGCCCTCTCAGTTCTCATTACTTTTGGCGGGAAACTGCGACATTTCGGCGCCAAACAACTCTTTACCCTCATTCTCCACTCTCCACACGCAATCCTTGGATTCAGCTTTCTCCATCTCAATTCTCACAAGAGGCGCACCCAAGATATGGACAACCATGGAGCCGGTAGTTATTTCGTGGATGAGAAGGCCGTTCTTGTCGAGAACATTTTCTTCGACTTTCTCAAGAGTTTTCGCCTCAATGGGAACTCTGGAGACCCTCACTACGAGGCCGAGATAGAAACTATGATGACTGGCGAATCAAACACCATGTTCATTGATTTTGCTCACCTTATGCGCTCCAATGATCTTCTTCACATAGCAATCGCTGACGAATACTTGAGGTTTGAACCGTATCTCAAGAATGCCTGTAAGCGATTTGTGATGGAGCAGAATCCTTATTTTATCGCTGAGGATAACCCCTTCAAGGACATAAATGTTGCTTTTTTCAACATTCCTGTTTCTAAAAGGTTGAGAGAATTGGCTACTGCAGAAATTGGGAAATTGGTATCTGTGACAGGAGTGGTGACGCGGACAAGCGAGGTCCGACCAGAGCTTTTACAGGGGACCTTTAAGTGCTTAGAATGTGGAAATGTCATAAAGAATGTTGAACAACAATTTAAGTACACGGAGCCAACAATATGTATGAACCCAACCTGTTCGAATAGAACAAAGTGGGCATTACTTCGGCAAGAGAGCAAATTCGCTGATTGGCAGAGGGTGCGAATGCAAGAGACTTCGAAGGAGATACCGGCTGGCTCTCTTCCACGATCTTTGGATGTTATTCTCCGCCATGAGATGGTTGAACGTGCTAGGGCTGGAGACACGGTCATCTTCACGGGTACAGTAGTTGTCATTCCAGATATATTAGCATTAGCCTCTCCAGGAGAAAGAGCAGAATGTCGTCGAGAAGCTTCAGAGCAAAAAAACTCCGCGGTTGGACATGAAGGGATGAGGGGGCTACGAGCACTGGGAGTGAGGGACCTGTCTTATCGTCTAGCCTTTATTGCAAATTCAGTTTCAGATGGCAGAAGGGATTTTGATATCAGAAATAGGAAAAAGGATGCTGATGAAGACAACCAGCGTTTTACCGCTGAAGAGCTTGATGAAGTTCAAAGAATGAGGAATACACCCGACTTCTTCAACAGACTTATTGATAGCATTGCACCAGCAGTCTTCGGTCATCAAGATATCAAGCGAGCAATCCTGCTAATGCTGTTAGGTGGTGTCCACAAATTAACTCATGAAGGCATTAACCTTCGAGGCGACATCAATGTCTGTATAGTAGGAGATCCAAGCTGTGCGAAGTCTCAGTTTCTTAAGTATACTTCAGGTATTGTGCCAAGATCAGTTTACACATCTGGAAAGTCCTCTTCTGCTGCTGGATTGACTGCAACTGTAGCCAAAGAACCAGAAACTGGAGAGTTTTGCATTGAGGCCGGTGCGTTGATGCTTGCTGACAATGGAATTTGCTGTATTGATGAATTTGACAAAATGGACATCAGGGATCAGGTTGCAATTCATGAAGCTATGGAGCAGCAGACCATAAGCATAACAAAAGCAGGAATACAGGCAACACTAAATGCTAGGACATCAATCCTTGCTGCTGCAAATCCAACAGGAGGGCGCTATGACAAGTCTAAACCACTCAAGTATAATGTTGCTCTGCCTCCTGCTATTCTTTCAAGGTTTGACCTTGTGTACGTGATGATAGATGACCCAGATGATCAAACTGATTACCACATTGCACACCACATTGTGAGAGTGCATCAGAAGCATGAAGATGCCCTTTCTCCTGCATTCACTACTGCTGAGTTGAAGCGTTATATTGCATATGCCAAAACTCTAAAACCAAAGTTAAGTTTGGAAGCCAGAAAGATGTTGGTGGACTCTTATGTTGCTCTTCGCAGAGGAGATACTACTCCCGGAAGTAGGGTTGCCTATCGTATGACAGTCAGGCAGCTCGAGGCATTAATAAGGCTGTCCGAAGCAACTGCTCGGAGTCATTTGGAAACTCTGGTGAGTCCATTTCAGACATTATGCTTAAATTATGTGGAATCTAGCGAGATTGACCTATCTGCATTTCAAGAAGAAACTAATGGTGGTGTACATGGTGACAATAATGTTGACAATGGGCCAAAAGAGGTTGATGACGAACCTAGGAATGGTGCAACAGAGCCAACTTCTGGAAATGGTGAAACAGGTTCTGGAAGTCGACGTGTGAAAAGACTTGGCTTGAGTTATGAATATTTTCAGAGGGTTGCCCAAGCCCTTGTCATGCGCCTGAGGCAGCACGAAGAATCTGTAATGAAAGAAGGAACTGGGCTGGCAGGAATGAGGCAGAGAGACTTAATTCAATGGTATGTGTCTCAGCAGAACGAGAGAAATGGCTATAGCTCCTCGGAGGAGGTAGCAAAAGAAGTTATAAATATTAAAGCTATTATCCAGAGGTTGATAGTAGTGGAAGGCCATTTGATAGTGGTCGATGATGGGAGGCCAGTAGATGGCGATGTTGCAGGCCAACAATCGTTAGTAAATAACAGGATTTTAGCAGTGGCTCCTAATTATGTCGTAGATTGA | 2667 | 44.92 | MGHRRPKPSTSGTPLALALSVLITFGGKLRHFGAKQLFTLILHSPHAILGFSFLHLNSHKRRTQDMDNHGAGSYFVDEKAVLVENIFFDFLKSFRLNGNSGDPHYEAEIETMMTGESNTMFIDFAHLMRSNDLLHIAIADEYLRFEPYLKNACKRFVMEQNPYFIAEDNPFKDINVAFFNIPVSKRLRELATAEIGKLVSVTGVVTRTSEVRPELLQGTFKCLECGNVIKNVEQQFKYTEPTICMNPTCSNRTKWALLRQESKFADWQRVRMQETSKEIPAGSLPRSLDVILRHEMVERARAGDTVIFTGTVVVIPDILALASPGERAECRREASEQKNSAVGHEGMRGLRALGVRDLSYRLAFIANSVSDGRRDFDIRNRKKDADEDNQRFTAEELDEVQRMRNTPDFFNRLIDSIAPAVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKHEDALSPAFTTAELKRYIAYAKTLKPKLSLEARKMLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEATARSHLETLVSPFQTLCLNYVESSEIDLSAFQEETNGGVHGDNNVDNGPKEVDDEPRNGATEPTSGNGETGSGSRRVKRLGLSYEYFQRVAQALVMRLRQHEESVMKEGTGLAGMRQRDLIQWYVSQQNERNGYSSSEEVAKEVINIKAIIQRLIVVEGHLIVVDDGRPVDGDVAGQQSLVNNRILAVAPNYVVD | 888 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 20916696 | 20923673 | + | MC01g1677 | Mch1g2181 | 677073 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch1g2181 | 888 | Pfam | MCM N-terminal domain | 86 | 180 | IPR027925 | - | |
| Mch1g2181 | 888 | MobiDBLite | consensus disorder prediction | 727 | 768 | - | - | |
| Mch1g2181 | 888 | Gene3D | - | 187 | 315 | IPR012340 | - | |
| Mch1g2181 | 888 | Pfam | MCM6 C-terminal winged-helix domain | 772 | 886 | IPR041024 | - | |
| Mch1g2181 | 888 | Gene3D | - | 75 | 183 | - | - | |
| Mch1g2181 | 888 | SMART | mcm | 183 | 719 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Mch1g2181 | 888 | SUPERFAMILY | Nucleic acid-binding proteins | 87 | 317 | IPR012340 | - | |
| Mch1g2181 | 888 | FunFam | DNA helicase | 214 | 265 | - | - | |
| Mch1g2181 | 888 | Gene3D | - | 388 | 710 | IPR027417 | - | |
| Mch1g2181 | 888 | ProSitePatterns | MCM family signature. | 518 | 526 | IPR018525 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro) | |
| Mch1g2181 | 888 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 287 | 298 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Mch1g2181 | 888 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 184 | 196 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Mch1g2181 | 888 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 234 | 251 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Mch1g2181 | 888 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 142 | 154 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Mch1g2181 | 888 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 346 | 367 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Mch1g2181 | 888 | Gene3D | - | 770 | 888 | - | - | |
| Mch1g2181 | 888 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 562 | 574 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Mch1g2181 | 888 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 538 | 551 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Mch1g2181 | 888 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 510 | 524 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Mch1g2181 | 888 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 589 | 597 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Mch1g2181 | 888 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 450 | 465 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Mch1g2181 | 888 | Pfam | MCM OB domain | 187 | 315 | IPR033762 | - | |
| Mch1g2181 | 888 | Pfam | MCM AAA-lid domain | 634 | 704 | IPR041562 | - | |
| Mch1g2181 | 888 | ProSiteProfiles | MCM family domain profile. | 409 | 615 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Mch1g2181 | 888 | Gene3D | - | 214 | 265 | - | - | |
| Mch1g2181 | 888 | FunFam | DNA helicase | 394 | 721 | - | - | |
| Mch1g2181 | 888 | Pfam | MCM P-loop domain | 397 | 619 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Mch1g2181 | 888 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 419 | 704 | IPR027417 | - | |
| Mch1g2181 | 888 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 81 | 821 | IPR031327 | GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006268(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:1902969(PANTHER)|GO:1990518(PANTHER) | |
| Mch1g2181 | 888 | CDD | MCM6 | 412 | 705 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch1g2181 | Mch-Chr1:20916696 | Mch4g0567 | Mch-Chr4:3605314 | 1.62E-106 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch1g2181 | K02542 | - | csv:101219775 | 1425.61 |