Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0040 ATGGCTGTAACAGCCCCAGGGCAGCTCAACGTTAACGAGTCCCCATCGTGGGGATCTAGAAGTGTCGACTGCTTTGAAAAATTGGAGCAGATTGGCGAAGGCACTTATGGGCAAGTTTATATGGCCAGAGAGTTAAAAACAGGTGAAATTGTTGCACTGAAGAAAATACGAATGGATAATGAGAGAGAGGGGTTTCCTATTACTGCCATACGAGAAATCAAAATTCTAAAGAAGCTCCATCATGAAAATGTAATCAAGTTGAAAGAGATTGTGACATCTCCAGGTCCCGAGAAGGATGAACAAGGGAAGCCAGGCATGTTCTCTGTTGTAATTTATGGTAACAAGTACAAAGGTGGCATCTACATGGTTTTTGAGTACATGGACCACGATTTGACGGGTCTTGCTGATCGTCCAGGGATGAGATTTTCAGTTCCCCAAATTAAGTGCTACATGAAGCAGCTTCTCACAGGGCTTCATTATTGTCATGTAAATCAAGTACTGCATAGAGATATAAAAGGCTCAAATCTGCTTATTGACAATGAAGGAAATCTGAAGCTTGCAGATTTTGGGCTTGCACGATCATTTTCTAATGATCATAATGCAAATCTAACCAATCGTGTAATTACCTTATGGTACAGACCTCCTGAATTGCTGCTTGGGTCAACAAAATATGGTCCAGCAGTCGACATGTGGTCCGTTGGTTGTATATTTGCAGAGCTTCTACATGGGAAGCCAATATTCCCCGGCAAGGATGAGCCGGAGCAGTTAAATAAGATCTTTGAGCTATGCGGTGCTCCGGATGAAGTTAATTGGCCTGGGGTTTCTAAAATCCCTTGGTACAACAATTTCAAGCCCACAAGGCCGATGAAGAGACGTATAAGAGAAGTTTTCAGGCATTTTGATCGTCATGCTTTAGAACTGTTGGAGAAGATGCTAACGCTCGATCCTTCTCAGAGGATATCTGCCAAGGATGCGCTAGATGCGGAGTATTTTTGGACGGATCCATTACCTTGTGATCCTAAAAGTTTACCCAAGTATGAATCATCACATGAGTTCCAGACAAAGAAGAAGCGCCAACAGCAACGGCAACATGAAGAAACTGCAAAGCGACAGAAGTTGCAACACCCACAGCATGCACGCCTTCCACCAATTCAGCAGTCGGGGCAAGCACACGGGCAGATGCGACCGGTACCTAACCAGCCTATTCATGGATCTCAACCGCCAGTTGCTGCGGGGCCTAGCCATCATTTTGGGAAGCCTCGTGGACCGCCAGGTCCTGGTAGGTATCCTTCAGGTGGAAATCCTCCCTCTGGATACAACCACCCAAGTCGTGGTGGTCAAGGTGGGGGTGGTTATGGTAATGCACAATATGCTCAAGGACGAGGTGCACCCTATGGTTCTGGTAACATGTCCGCTGCTGGTCCTCGAGGCGGGGGTGGGGGTGGAGGTGGTGGTGCCTATGGCGTTGGAGCTCCAAATTACACACAGAATGGTCCATATGCCGGTAGTTCTGGTACTGGCCGTGGCTCCAATGTGATGGGTGGAAACCGAAACCAGCAATACGGGTGGCAACAGTAA 1578 46.96 MAVTAPGQLNVNESPSWGSRSVDCFEKLEQIGEGTYGQVYMARELKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGKPGMFSVVIYGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMKQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMKRRIREVFRHFDRHALELLEKMLTLDPSQRISAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQHEETAKRQKLQHPQHARLPPIQQSGQAHGQMRPVPNQPIHGSQPPVAAGPSHHFGKPRGPPGPGRYPSGGNPPSGYNHPSRGGQGGGGYGNAQYAQGRGAPYGSGNMSAAGPRGGGGGGGGGAYGVGAPNYTQNGPYAGSSGTGRGSNVMGGNRNQQYGWQQ 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 321771 327455 + MC02g0033 Mch2g0040 680962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0040 525 SUPERFAMILY Protein kinase-like (PK-like) 19 339 IPR011009 -
Mch2g0040 525 PANTHER CELL DIVISION PROTEIN KINASE 25 331 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Mch2g0040 525 MobiDBLite consensus disorder prediction 342 525 - -
Mch2g0040 525 Gene3D Phosphorylase Kinase; domain 1 14 128 - -
Mch2g0040 525 FunFam Cyclin-dependent kinase C-2 12 128 - -
Mch2g0040 525 MobiDBLite consensus disorder prediction 344 373 - -
Mch2g0040 525 FunFam Cyclin-dependent kinase C-2 129 371 - -
Mch2g0040 525 CDD STKc_CDK9_like 25 331 - -
Mch2g0040 525 Gene3D Transferase(Phosphotransferase) domain 1 129 371 - -
Mch2g0040 525 ProSiteProfiles Protein kinase domain profile. 25 331 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch2g0040 525 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch2g0040 525 MobiDBLite consensus disorder prediction 380 394 - -
Mch2g0040 525 MobiDBLite consensus disorder prediction 496 525 - -
Mch2g0040 525 Pfam Protein kinase domain 25 331 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch2g0040 525 SMART serkin_6 25 331 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch2g0040 525 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0040 Mch-Chr2:321771 Mch5g0670 Mch-Chr5:4518006 1.57E-112 dispersed
Mch2g0040 Mch-Chr2:321771 Mch10g1090 Mch-Chr10:8041558 3.56E-113 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77172 PF00069 Pkinase 1.20E-74 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0040 K08819 - csv:101220936 966.066